Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SCFD1
  • Mouse genes Scfd1
  • Rat genes Scfd1
  • Zfish genes scfd1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Scfd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SCFD1	IPI	UniProtKB:Q9H9E3	Human	PMID:19536132
Molecular Function	GO:0005515	protein binding	SCFD1	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Scfd1	IPI	UniProtKB:Q08851	Rat	PMID:11879635|RGD:10047249
Molecular Function	GO:0005515	protein binding	Scfd1	IPI	UniProtKB:Q68FW4	Rat	PMID:11879635|RGD:10047249
Molecular Function	GO:0005515	protein binding	Scfd1	IPI	UniProtKB:P83436	Rat	PMID:19536132|RGD:8554815
Molecular Function	GO:0005515	protein binding	Scfd1	IPI	UniProtKB:Q96JB2	Rat	PMID:19536132|RGD:8554815
Molecular Function	GO:0005515	protein binding	Scfd1	IPI	UniProtKB:Q9H9E3	Rat	PMID:19536132|RGD:8554815
Molecular Function	GO:0044877	protein-containing complex binding	Scfd1	IDA		Rat	PMID:19536132|RGD:8554815
Molecular Function	GO:0019905	syntaxin binding	Scfd1	IPI	UniProtKB:Q9Z158	Rat	PMID:10930465|RGD:8553381
Molecular Function	GO:0019905	syntaxin binding	Scfd1	IDA		Rat	PMID:15670607|RGD:2312423
Cellular Component	GO:0005801	cis-Golgi network	SCFD1	IDA		Human	PMID:15649705
Cellular Component	GO:0005798	Golgi-associated vesicle	Scfd1	IDA		Rat	PMID:9195952|RGD:633771
Cellular Component	GO:0005886	plasma membrane	Scfd1	IDA		Rat	PMID:9195952|RGD:633771
Biological Process	GO:0051216	cartilage development	scfd1	IMP	ZFIN:ZDB-GENO-170317-11	Zfish	PMID:27851892
Biological Process	GO:0048702	embryonic neurocranium morphogenesis	scfd1	IMP	ZFIN:ZDB-GENO-170317-11	Zfish	PMID:27851892
Biological Process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	scfd1	IMP	ZFIN:ZDB-GENO-170317-11	Zfish	PMID:27851892
Biological Process	GO:0031101	fin regeneration	scfd1	IMP	ZFIN:ZDB-GENO-030117-1	Zfish	PMID:12798289
Biological Process	GO:0034436	glycoprotein transport	scfd1	IMP	ZFIN:ZDB-GENO-170317-11	Zfish	PMID:27851892
Biological Process	GO:1902902	negative regulation of autophagosome assembly	SCFD1	IMP		Human	PMID:21242315
Biological Process	GO:0006892	post-Golgi vesicle-mediated transport	Scfd1	IDA		Rat	PMID:9195952|RGD:633771
Biological Process	GO:0060628	regulation of ER to Golgi vesicle-mediated transport	Scfd1	IMP		Rat	PMID:14565970|RGD:2312425
Biological Process	GO:0051223	regulation of protein transport	SCFD1	IMP		Human	PMID:21242315
Biological Process	GO:0001666	response to hypoxia	Scfd1	IEP		Rat	PMID:9195952|RGD:633771
Biological Process	GO:0009636	response to toxic substance	SCFD1	IEP		Human	PMID:15649705
Biological Process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Scfd1	IMP		Rat	PMID:19536132|RGD:8554815
Biological Process	GO:1901998	toxin transport	Scfd1	IMP		Mouse	PMID:23716698

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern