Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RRP1B
  • Mouse genes Rrp1b
  • Rat genes Rrp1b
  • Zfish genes rrp1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rrp1b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P62136	Human	PMID:19389623
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:Q01094	Human	PMID:20040599
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P22087	Human	PMID:20926688
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P36873	Human	PMID:20926688
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P46777	Human	PMID:20926688
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P56182	Human	PMID:20926688
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P61353	Human	PMID:20926688
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P62136	Human	PMID:20926688
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P62140	Human	PMID:20926688
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:Q07955	Human	PMID:20926688
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:Q07955	Human	PMID:23604122
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P36873	Human	PMID:24366813
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:Q9DLK6	Human	PMID:26311876
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P62140	Human	PMID:27173435
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P36873	Human	PMID:28330616
Molecular Function	GO:0005515	protein binding	RRP1B	IPI	UniProtKB:P22087	Human	PMID:29568061
Molecular Function	GO:0005515	protein binding	Rrp1b	IPI	PR:Q62318	Mouse	PMID:19710015
Molecular Function	GO:0005515	protein binding	Rrp1b	IPI	MGI:MGI:2685307	Mouse	PMID:19710015
Molecular Function	GO:0005515	protein binding	Rrp1b	IPI	MGI:MGI:1340806	Mouse	PMID:19710015
Molecular Function	GO:0005515	protein binding	Rrp1b	IPI	PR:P09405	Mouse	PMID:19710015
Molecular Function	GO:0005515	protein binding	Rrp1b	IPI	PR:Q9JKB3	Mouse	PMID:19710015
Molecular Function	GO:0005515	protein binding	Rrp1b	IPI	PR:Q61937	Mouse	PMID:19710015
Molecular Function	GO:0003723	RNA binding	RRP1B	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	RRP1B	HDA		Human	PMID:22681889
Molecular Function	GO:0003713	transcription coactivator activity	RRP1B	IMP		Human	PMID:20040599
Cellular Component	GO:0005694	chromosome	RRP1B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	RRP1B	HDA		Human	PMID:16780588
Cellular Component	GO:0000791	euchromatin	Rrp1b	IDA		Mouse	PMID:19710015
Cellular Component	GO:0001652	granular component	RRP1B	IDA		Human	PMID:20926688
Cellular Component	GO:0000792	heterochromatin	Rrp1b	IDA		Mouse	PMID:19710015
Cellular Component	GO:0005730	nucleolus	RRP1B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005730	nucleolus	RRP1B	IDA		Human	PMID:20040599
Cellular Component	GO:0005730	nucleolus	RRP1B	IDA		Human	PMID:26311876
Cellular Component	GO:0005654	nucleoplasm	RRP1B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	RRP1B	HDA		Human	PMID:16780588
Cellular Component	GO:0005634	nucleus	Rrp1b	IDA		Mouse	PMID:19710015
Biological Process	GO:0098586	cellular response to virus	RRP1B	IDA		Human	PMID:26311876
Biological Process	GO:0034260	negative regulation of GTPase activity	Rrp1b	IMP		Mouse	MGI:MGI:5914084|PMID:18081427
Biological Process	GO:0043923	positive regulation by host of viral transcription	RRP1B	IMP		Human	PMID:26311876
Biological Process	GO:0043065	positive regulation of apoptotic process	RRP1B	IMP		Human	PMID:20040599
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	RRP1B	IMP		Human	PMID:20040599
Biological Process	GO:0043484	regulation of RNA splicing	Rrp1b	IMP		Mouse	MGI:MGI:5919306|PMID:23604122

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern