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Rrp1b Gene Detail
Summary
  • Symbol
    Rrp1b
  • Name
    ribosomal RNA processing 1 homolog B (S. cerevisiae)
  • Synonyms
    2600005C20Rik, mKIAA0179
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919712
    NCBI Gene: 72462
  • Gene Overview
    MyGene.info: RRP1B
Location & Maps
more
  • Sequence Map
    Chr17:32036100-32062865 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      26766 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 17.34 cM
  • Mapping Data
    4 experiments
Homology
more
  • Human Ortholog
    RRP1B, ribosomal RNA processing 1B
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RRP1B, ribosomal RNA processing 1B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    KIAA0179, Nnp1, NNP1L, PPP1R136, RRP1
  • Links
    NCBI Gene ID: 23076
    neXtProt AC: NX_Q14684

  • Chr Location
    21q22.3; chr21:43659551-43696079 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 57086
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: RRP1B
  • Gene Tree
Human Diseases
less
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    13 phenotype references
  • All Mutations and Alleles
    37
  • Gene trapped
    32
  • Targeted
    5
  • Genomic Mutations
    2 involving Rrp1b
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031369 VEGA Gene Model | MGI Sequence Detail 26766 C57BL/6J ±  kb
transcript OTTMUST00000077727 VEGA | MGI Sequence Detail 4874 Not Applicable  
polypeptide OTTMUSP00000041177 VEGA | MGI Sequence Detail 724 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    182 from dbSNP Build 142
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000014312 ribosomal RNA processing protein 1 homolog B
  • InterPro Domains
    IPR010301 Nucleolar, Nop52
Molecular
Reagents
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  • All nucleic 11
    Genomic 1
    cDNA 7
    Primer pair 3

    Microarray probesets 6
References
more
  • Summaries
    All 34
    Developmental Gene Expression 2
    Diseases 2
    Gene Ontology 4
    Phenotypes 13
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:161398 Yu T, et al., Deficiencies in the region syntenic to human 21q22.3 cause cognitive deficits in mice. Mamm Genome. 2010 Jun;21(5-6):258-67

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory