Rrp1b
Gene Detail

Symbol Name ID

Rrp1b ribosomal RNA processing 1 homolog B (S. cerevisiae) MGI:1919712

Synonyms

2600005C20Rik, mKIAA0179

Feature Type

protein coding gene

Genetic Map

Chromosome 17

17.34 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)

Sequence Map

Chr17:32036100-32062865 bp, + strand From VEGA annotation of GRCm38   26766 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:57086  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Rrp1b

Human homologs

Human Homolog		RRP1B, ribosomal RNA processing 1 homolog B (S. cerevisiae)
NCBI Gene ID		23076
neXtProt AC		NX_Q14684
Human Synonyms		KIAA0179, Nnp1, NNP1L, RRP1
Human Chr (Location)		21q22.3; chr21:45079432-45115960 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(34) : Targeted(2) Gene trapped(32)

Gene Ontology (GO) classifications

All GO classifications: (10 annotations)

Process	negative regulation of phosphatase activity, rRNA processing
Component	cytosol, euchromatin, ...
Function	protein binding

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (67)    Tissues (65)    Images (4)
Theiler Stages: 13, 15, 17, 20, 22, 23, 26, 28

Assay Type	Results
RNA in situ	49
RT-PCR	18

cDNA source data(7)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(11) Genomic(1) cDNA(7) Primer pair(3)
Microarray probesets(6)

Other database links

VEGA Gene Model	OTTMUSG00000031369 (Evidence)
Ensembl Gene Model	ENSMUSG00000058392 (Evidence)
Entrez Gene	72462 (Evidence)
DFCI	TC1579242, TC1601480, TC1726799
DoTS	DT.110571662, DT.480902, DT.91317165
NIA Mouse Gene Index	U043585
Consensus CDS Project	CCDS28613.1
International Mouse Knockout Project Status	Rrp1b

Sequences

Length	Strain/Species
genomic	OTTMUSG00000031369	VEGA Gene Model | MGI Sequence Detail	26766	C57BL/6J
transcript	OTTMUST00000077727	VEGA | MGI Sequence Detail	4874	Not Applicable
polypeptide	OTTMUSP00000041177	VEGA | MGI Sequence Detail	724	Not Applicable

All sequences(59) RefSeq(4) UniProt(4)

Polymorphisms

SNPs(132 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR010301	Nucleolar, Nop52
Protein Ontology	PR:000014312	ribosomal RNA processing protein 1 B

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:161398 Yu T, et al., Deficiencies in the region syntenic to human 21q22.3 cause cognitive deficits in mice. Mamm Genome. 2010 Jun;21(5-6):258-67
All references(35)