About   Help   FAQ
Rrp1b
Gene Detail
 Symbol
Name
ID
Rrp1b
ribosomal RNA processing 1 homolog B (S. cerevisiae)
MGI:1919712
Synonyms 2600005C20Rik, mKIAA0179
Feature Type protein coding gene
Genetic Map
Chromosome 17
17.34 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr17:32036100-32062865 bp, + strand
From VEGA annotation of GRCm38

  26766 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:57086  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Rrp1b

Human
homologs
Human Homolog RRP1B, ribosomal RNA processing 1B
NCBI Gene ID 23076
neXtProt AC  NX_Q14684
Human Synonyms  KIAA0179, Nnp1, NNP1L, PPP1R136, RRP1
Human Chr (Location)  21q22.3; chr21:43659551-43696079 (+)  GRCh38
Alleles
and
phenotypes
All alleles(34) : Gene trapped(32) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process negative regulation of phosphatase activity, rRNA processing
Component cytosol, euchromatin, ...
Function poly(A) RNA binding, protein binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (67)    Tissues (65)    Images (4)
Theiler Stages: 13, 15, 17, 20, 22, 23, 26, 28
Assay TypeResults
RNA in situ 49
RT-PCR 18
cDNA source data(7)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(11) Genomic(1) cDNA(7) Primer pair(3)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000031369 (Evidence)
Ensembl Gene ModelENSMUSG00000058392 (Evidence)
Entrez Gene72462 (Evidence)
DFCITC1579242, TC1601480, TC1726799
DoTSDT.110571662, DT.480902, DT.91317165
NIA Mouse Gene IndexU043585
Consensus CDS ProjectCCDS28613.1
International Mouse Knockout Project StatusRrp1b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031369 VEGA Gene Model | MGI Sequence Detail 26766 C57BL/6J ±  kb
transcript OTTMUST00000077727 VEGA | MGI Sequence Detail 4874 Not Applicable 
polypeptide OTTMUSP00000041177 VEGA | MGI Sequence Detail 724 Not Applicable 

For the selected sequences
All sequences(69) RefSeq(14) UniProt(4)
Polymorphisms SNPs within 2kb(182 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010301 Nucleolar, Nop52
Protein Ontology PR:000014312 ribosomal RNA processing protein 1 homolog B
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:161398 Yu T, et al., Deficiencies in the region syntenic to human 21q22.3 cause cognitive deficits in mice. Mamm Genome. 2010 Jun;21(5-6):258-67
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/15/2014
MGI 5.18
The Jackson Laboratory