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Rrp1b Gene Detail
Summary
  • Symbol
    Rrp1b
  • Name
    ribosomal RNA processing 1 homolog B (S. cerevisiae)
  • Synonyms
    2600005C20Rik, mKIAA0179
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919712
    NCBI Gene: 72462
  • Gene Overview
    MyGene.info: RRP1B
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:32036162-32062865 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 17.34 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    182 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919712
protein coding gene Chr17:32036100-32062865 (.)
129S1/SvImJ MGP_129S1SvImJ_G0023497
protein coding gene Chr17:31850782-31877548 (+)
A/J MGP_AJ_G0023454
protein coding gene Chr17:30802306-30829191 (+)
AKR/J MGP_AKRJ_G0023420
protein coding gene Chr17:31069936-31096704 (+)
BALB/cJ MGP_BALBcJ_G0023459
protein coding gene Chr17:30892356-30919135 (+)
C3H/HeJ MGP_C3HHeJ_G0023221
protein coding gene Chr17:31446419-31473182 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023902
protein coding gene Chr17:32948077-32975805 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021376
protein coding gene Chr17:27906530-27933824 (+)
CAST/EiJ MGP_CASTEiJ_G0022722
protein coding gene Chr17:31509712-31536605 (+)
CBA/J MGP_CBAJ_G0023196
protein coding gene Chr17:34361035-34387800 (+)
DBA/2J MGP_DBA2J_G0023326
protein coding gene Chr17:30181022-30208385 (+)
FVB/NJ MGP_FVBNJ_G0023296
protein coding gene Chr17:30003268-30029995 (+)
LP/J MGP_LPJ_G0023404
protein coding gene Chr17:32060133-32086944 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023314
protein coding gene Chr17:33435571-33462248 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023944
protein coding gene Chr17:31432057-31458819 (+)
PWK/PhJ MGP_PWKPhJ_G0022471
protein coding gene Chr17:29062739-29102770 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022290
protein coding gene Chr17:29428390-29457463 (+)
WSB/EiJ MGP_WSBEiJ_G0022784
protein coding gene Chr17:31406383-31433162 (+)



Homology
more
  • Human Ortholog
    RRP1B, ribosomal RNA processing 1B
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RRP1B, ribosomal RNA processing 1B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    KIAA0179, Nnp1, NNP1L, PPP1R136, RRP1
  • Links
    NCBI Gene ID: 23076
    neXtProt AC: NX_Q14684
    UniProt: Q14684

  • Chr Location
    21q22.3; chr21:43659551-43696079 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 57086
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RRP1B
  • Gene Tree
Human Diseases
less
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    18 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72462 NCBI Gene Model | MGI Sequence Detail 26704 C57BL/6J ±  kb
transcript NM_028244 RefSeq | MGI Sequence Detail 4809 C57BL/6  
polypeptide Q91YK2 UniProt | EBI | MGI Sequence Detail 724 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    Genomic 1
    cDNA 9
    Primer pair 3

    Microarray probesets 6
References
more
  • Summaries
    All 48
    Developmental Gene Expression 2
    Diseases 2
    Gene Ontology 8
    Phenotypes 18
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:262380 Watson-Scales S, et al., Analysis of motor dysfunction in Down Syndrome reveals motor neuron degeneration. PLoS Genet. 2018 May;14(5):e1007383

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory