Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RPL38
  • Mouse genes Rpl38
  • Rat genes LOC680512,RGD1561636,Rpl38,Rpl38-ps8,Rpl38-ps9
  • Zfish genes rpl38
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rpl38

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RPL38	IPI	UniProtKB:Q9P287	Human	PMID:32296183
Molecular Function	GO:0003735	structural constituent of ribosome	RPL38	IDA		Human	PMID:23636399
Molecular Function	GO:0003735	structural constituent of ribosome	RPL38	IDA		Human	PMID:32669547
Molecular Function	GO:0003735	structural constituent of ribosome	Rpl38	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL38	IPI		Human	PMID:25901680
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL38	HDA		Human	PMID:12962325
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL38	IDA		Human	PMID:25957688
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL38	IDA		Human	PMID:32669547
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl38	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl38	IPI		Mouse	MGI:MGI:6810796|PMID:25901680
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl38	IDA		Rat	PMID:621213|RGD:11036097
Cellular Component	GO:0022626	cytosolic ribosome	RPL38	IDA		Human	PMID:23636399
Cellular Component	GO:0033291	eukaryotic 80S initiation complex	Rpl38	IDA		Mouse	PMID:21529712
Cellular Component	GO:0005925	focal adhesion	RPL38	HDA		Human	PMID:21423176
Cellular Component	GO:0042788	polysomal ribosome	RPL38	IDA		Human	PMID:25957688
Cellular Component	GO:0014069	postsynaptic density	RPL38	EXP		Human	PMID:21170055
Cellular Component	GO:0014069	postsynaptic density	RPL38	IDA		Human	PMID:21170055
Cellular Component	GO:0045202	synapse	Rpl38	IDA		Mouse	PMID:25211037
Cellular Component	GO:0045202	synapse	Rpl38	EXP		Mouse	PMID:25211037
Cellular Component	GO:0045202	synapse	Rpl38	EXP		Mouse	PMID:16452087
Cellular Component	GO:0045202	synapse	Rpl38	IDA		Mouse	PMID:16452087
Biological Process	GO:0034463	90S preribosome assembly	Rpl38	IDA		Mouse	PMID:21529712
Biological Process	GO:0048318	axial mesoderm development	Rpl38	IMP	MGI:MGI:1859977	Mouse	PMID:21529712
Biological Process	GO:0048318	axial mesoderm development	Rpl38	IMP	MGI:MGI:2447994	Mouse	PMID:21529712
Biological Process	GO:0048318	axial mesoderm development	Rpl38	IMP	MGI:MGI:1861228	Mouse	PMID:21529712
Biological Process	GO:0043009	chordate embryonic development	rpl38	IMP	ZFIN:ZDB-MRPHLNO-070327-13	Zfish	PMID:17183665
Biological Process	GO:0002181	cytoplasmic translation	RPL38	IDA		Human	PMID:25957688
Biological Process	GO:0042474	middle ear morphogenesis	Rpl38	IMP	MGI:MGI:1861228	Mouse	PMID:21062742
Biological Process	GO:0001503	ossification	Rpl38	IMP	MGI:MGI:1861228	Mouse	PMID:21062742
Biological Process	GO:0006417	regulation of translation	Rpl38	IMP	MGI:MGI:1861228	Mouse	PMID:21529712
Biological Process	GO:0006417	regulation of translation	Rpl38	IMP	MGI:MGI:2447994	Mouse	PMID:21529712
Biological Process	GO:0006417	regulation of translation	Rpl38	IMP	MGI:MGI:1859977	Mouse	PMID:21529712
Biological Process	GO:0007605	sensory perception of sound	Rpl38	IMP	MGI:MGI:1861228	Mouse	PMID:21062742
Biological Process	GO:0001501	skeletal system development	Rpl38	IMP	MGI:MGI:1861228	Mouse	PMID:21529712
Biological Process	GO:0001501	skeletal system development	Rpl38	IMP	MGI:MGI:2447994	Mouse	PMID:21529712
Biological Process	GO:0001501	skeletal system development	Rpl38	IMP	MGI:MGI:1859977	Mouse	PMID:21529712

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern