Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RGMB
  • Mouse genes Rgmb
  • Rat genes Rgmb
  • Zfish genes rgmb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rgmb

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	Rgmb	IDA		Mouse	PMID:14985445
Molecular Function	GO:0005515	protein binding	RGMB	IPI	UniProtKB:P12643	Human	PMID:25938661
Molecular Function	GO:0005515	protein binding	RGMB	IPI	UniProtKB:P97798	Human	PMID:25938661
Cellular Component	GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	Rgmb	IDA		Mouse	PMID:14749425
Cellular Component	GO:0005886	plasma membrane	Rgmb	IDA		Mouse	PMID:14985445
Biological Process	GO:0030509	BMP signaling pathway	Rgmb	IDA		Mouse	PMID:15671031
Biological Process	GO:0007155	cell adhesion	Rgmb	IDA		Mouse	PMID:14985445
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Rgmb	IDA		Mouse	MGI:MGI:3579753|PMID:15671031
Biological Process	GO:0007165	signal transduction	Rgmb	IDA		Mouse	MGI:MGI:3579753|PMID:15671031

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern