Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PCOLCE
  • Mouse genes Pcolce
  • Rat genes Pcolce
  • Zfish genes pcolcea,pcolceb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pcolce

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005518	collagen binding	PCOLCE	IDA		Human	PMID:12393877
Molecular Function	GO:0008201	heparin binding	PCOLCE	IDA		Human	PMID:12393877
Molecular Function	GO:0016504	peptidase activator activity	PCOLCE	IDA		Human	PMID:12393877
Molecular Function	GO:0005515	protein binding	PCOLCE	IPI	UniProtKB:P13497	Human	PMID:20207734
Molecular Function	GO:0005515	protein binding	PCOLCE	IPI	UniProtKB:P13497	Human	PMID:20979576
Molecular Function	GO:0005515	protein binding	PCOLCE	IPI	UniProtKB:P20908	Human	PMID:20979576
Molecular Function	GO:0005515	protein binding	PCOLCE	IPI	UniProtKB:P05067:PRO_0000000092	Human	PMID:24117177
Molecular Function	GO:0005515	protein binding	PCOLCE	IPI	UniProtKB:P07996	Human	PMID:24117177
Molecular Function	GO:0005515	protein binding	PCOLCE	IPI	UniProtKB:P39060:PRO_0000005794	Human	PMID:24117177
Molecular Function	GO:0005515	protein binding	PCOLCE	IPI	UniProtKB:O35988	Human	PMID:25286301
Molecular Function	GO:0005515	protein binding	PCOLCE	IPI	UniProtKB:P07589	Human	PMID:25286301
Molecular Function	GO:0005515	protein binding	PCOLCE	IPI	UniProtKB:P18828	Human	PMID:25286301
Molecular Function	GO:0005515	protein binding	PCOLCE	IPI	UniProtKB:P43407	Human	PMID:25286301
Molecular Function	GO:0005515	protein binding	PCOLCE	IPI	UniProtKB:P05067:PRO_0000000092	Human	PMID:28106549
Molecular Function	GO:0005515	protein binding	Pcolce	IPI	UniProtKB:Q9WVJ9	Mouse	MGI:MGI:5695689|PMID:26220971
Cellular Component	GO:0062023	collagen-containing extracellular matrix	PCOLCE	HDA		Human	PMID:20551380
Cellular Component	GO:0070062	extracellular exosome	PCOLCE	HDA		Human	PMID:21362503
Cellular Component	GO:0070062	extracellular exosome	PCOLCE	HDA		Human	PMID:23533145
Cellular Component	GO:0005576	extracellular region	PCOLCE	HDA		Human	PMID:27068509
Cellular Component	GO:0005615	extracellular space	PCOLCE	HDA		Human	PMID:20551380
Cellular Component	GO:0005615	extracellular space	Pcolce	HDA		Mouse	MGI:MGI:5640941|PMID:24006456
Biological Process	GO:1990830	cellular response to leukemia inhibitory factor	Pcolce	IEP		Mouse	PMID:20439489
Biological Process	GO:0006508	proteolysis	Pcolce	IDA		Mouse	PMID:7523404

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern