Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LAMP5
  • Mouse genes Lamp5
  • Rat genes Lamp5
  • Zfish genes zgc:165600
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Lamp5

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0030659	cytoplasmic vesicle membrane	Lamp5	IDA		Mouse	MGI:MGI:3696521|PMID:17215451
Cellular Component	GO:0032590	dendrite membrane	Lamp5	IDA		Mouse	MGI:MGI:3696521|PMID:17215451
Cellular Component	GO:0031901	early endosome membrane	Lamp5	IDA		Mouse	MGI:MGI:3696521|PMID:17215451
Cellular Component	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane	LAMP5	IDA		Human	PMID:21642595
Cellular Component	GO:0010008	endosome membrane	LAMP5	IDA		Human	PMID:21642595
Cellular Component	GO:0032584	growth cone membrane	Lamp5	IDA		Mouse	MGI:MGI:3696521|PMID:17215451
Cellular Component	GO:0005770	late endosome	Lamp5	IDA		Mouse	PMID:25592972
Cellular Component	GO:0005764	lysosome	Lamp5	IDA		Mouse	PMID:25592972
Cellular Component	GO:0005886	plasma membrane	LAMP5	IDA		Human	PMID:21642595
Cellular Component	GO:0005886	plasma membrane	Lamp5	IDA		Mouse	MGI:MGI:3696521|PMID:17215451
Cellular Component	GO:0055038	recycling endosome membrane	Lamp5	IDA		Mouse	MGI:MGI:3696521|PMID:17215451

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern