Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CHD3
  • Mouse genes Chd3
  • Rat genes Chd3
  • Zfish genes chd3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Chd3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0016887	ATP hydrolysis activity	CHD3	IDA		Human	PMID:28977666
Molecular Function	GO:0140658	ATP-dependent chromatin remodeler activity	CHD3	IDA		Human	PMID:28977666
Molecular Function	GO:0140658	ATP-dependent chromatin remodeler activity	CHD3	IDA		Human	PMID:30397230
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:Q8NC51	Human	PMID:12505151
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:O75400	Human	PMID:15383276
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:P42858	Human	PMID:15383276
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:P61956	Human	PMID:15383276
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:Q99728	Human	PMID:15383276
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:Q9Y2X7	Human	PMID:15383276
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:P61956	Human	PMID:16169070
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:Q13263	Human	PMID:16169070
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:O60341	Human	PMID:19703393
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:P17844	Human	PMID:20676135
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:Q13263	Human	PMID:21642969
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:P61956	Human	PMID:21900206
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:Q8IWS0	Human	PMID:22720776
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:O95365	Human	PMID:26816381
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:O96006	Human	PMID:27068747
Molecular Function	GO:0005515	protein binding	CHD3	IPI	UniProtKB:P48725	Human	PMID:9804427
Molecular Function	GO:0005515	protein binding	Chd3	IPI	PR:O08900	Mouse	PMID:10204490
Molecular Function	GO:0005515	protein binding	Chd3	IPI	PR:Q03267	Mouse	PMID:10204490
Molecular Function	GO:0003723	RNA binding	CHD3	HDA		Human	PMID:22658674
Molecular Function	GO:0000976	transcription cis-regulatory region binding	CHD3	IDA		Human	PMID:27068747
Cellular Component	GO:0034451	centriolar satellite	CHD3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005813	centrosome	CHD3	IDA		Human	PMID:17626165
Cellular Component	GO:0005737	cytoplasm	CHD3	IDA		Human	PMID:17626165
Cellular Component	GO:0005730	nucleolus	CHD3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	CHD3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	CHD3	IDA		Human	PMID:22720776
Cellular Component	GO:0005634	nucleus	CHD3	IDA		Human	PMID:28977666
Cellular Component	GO:0005634	nucleus	CHD3	IDA		Human	PMID:33283408
Cellular Component	GO:0016581	NuRD complex	CHD3	IDA		Human	PMID:17827154
Cellular Component	GO:0016581	NuRD complex	CHD3	IPI	UniProtKB:O94776,UniProtKB:O95983,UniProtKB:Q09028,UniProtKB:Q92769	Human	PMID:27068747
Cellular Component	GO:0016581	NuRD complex	CHD3	IDA		Human	PMID:33283408
Cellular Component	GO:0016581	NuRD complex	Chd3	IDA		Mouse	PMID:10204490
Cellular Component	GO:0016605	PML body	CHD3	IDA		Human	PMID:27068747
Biological Process	GO:0007417	central nervous system development	chd3	IMP	ZFIN:ZDB-MRPHLNO-151109-7	Zfish	PMID:25533962
Biological Process	GO:0007098	centrosome cycle	CHD3	IDA		Human	PMID:17626165
Biological Process	GO:0006325	chromatin organization	Chd3	IDA		Mouse	PMID:10204490
Biological Process	GO:0006338	chromatin remodeling	CHD3	IMP		Human	PMID:30397230
Biological Process	GO:0006338	chromatin remodeling	CHD3	IDA		Human	PMID:9790534
Biological Process	GO:0048589	developmental growth	chd3	IMP	ZFIN:ZDB-MRPHLNO-151109-7	Zfish	PMID:25533962
Biological Process	GO:0016575	histone deacetylation	CHD3	IDA		Human	PMID:10444591
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	CHD3	IDA		Human	PMID:27068747
Biological Process	GO:0007051	spindle organization	CHD3	IDA		Human	PMID:17626165

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern