Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CDH6
  • Mouse genes Cdh6
  • Rat genes Cdh6
  • Zfish genes cdh6
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Cdh6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0030054	cell junction	CDH6	IDA		Human	GO_REF:0000052
Cellular Component	GO:0098978	glutamatergic synapse	Cdh6	IDA		Mouse	PMID:28957665
Cellular Component	GO:0098978	glutamatergic synapse	Cdh6	IPI		Mouse	PMID:28957665
Cellular Component	GO:0098978	glutamatergic synapse	Cdh6	IMP		Mouse	PMID:28957665
Cellular Component	GO:0005654	nucleoplasm	CDH6	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005886	plasma membrane	CDH6	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005886	plasma membrane	Cdh6	IDA		Mouse	PMID:12139922
Cellular Component	GO:0045202	synapse	Cdh6	IDA		Mouse	PMID:28957665
Cellular Component	GO:0045202	synapse	Cdh6	IMP		Mouse	PMID:28957665
Biological Process	GO:0061550	cranial ganglion development	cdh6	IMP	ZFIN:ZDB-MRPHLNO-080910-1	Zfish	PMID:21584906
Biological Process	GO:0021545	cranial nerve development	cdh6	IMP	ZFIN:ZDB-MRPHLNO-080910-1	Zfish	PMID:21584906
Biological Process	GO:0008585	female gonad development	Cdh6	IEP		Rat	PMID:11803548|RGD:727630
Biological Process	GO:0048890	lateral line ganglion development	cdh6	IMP	ZFIN:ZDB-MRPHLNO-080910-1	Zfish	PMID:21584906
Biological Process	GO:0007219	Notch signaling pathway	Cdh6	IDA		Mouse	PMID:23117660
Biological Process	GO:0048793	pronephros development	cdh6	IMP	ZFIN:ZDB-MRPHLNO-070602-1	Zfish	PMID:17294363
Biological Process	GO:0048793	pronephros development	cdh6	IMP	ZFIN:ZDB-MRPHLNO-070602-2	Zfish	PMID:17294363
Biological Process	GO:0060042	retina morphogenesis in camera-type eye	cdh6	IMP	ZFIN:ZDB-MRPHLNO-070602-1	Zfish	PMID:18506771
Biological Process	GO:0060042	retina morphogenesis in camera-type eye	cdh6	IMP	ZFIN:ZDB-MRPHLNO-080910-1	Zfish	PMID:18506771
Biological Process	GO:0099560	synaptic membrane adhesion	Cdh6	IDA		Mouse	PMID:28957665
Biological Process	GO:0099560	synaptic membrane adhesion	Cdh6	IPI		Mouse	PMID:28957665
Biological Process	GO:0099560	synaptic membrane adhesion	Cdh6	IMP		Mouse	PMID:28957665

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern