Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes BPTF
  • Mouse genes Bptf
  • Rat genes Bptf
  • Zfish genes bptf
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Bptf

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008094	ATP-dependent activity, acting on DNA	BPTF	IDA		Human	PMID:14609955
Molecular Function	GO:0140751	histone octamer slider activity	bptf	IMP	ZFIN:ZDB-MRPHLNO-150923-2,ZFIN:ZDB-MRPHLNO-150923-3	Zfish	PMID:26041917
Molecular Function	GO:0005515	protein binding	BPTF	IPI	UniProtKB:P28370	Human	PMID:14609955
Molecular Function	GO:0005515	protein binding	BPTF	IPI	UniProtKB:Q09028	Human	PMID:14609955
Molecular Function	GO:0005515	protein binding	BPTF	IPI	UniProtKB:P28370	Human	PMID:15640247
Molecular Function	GO:0005515	protein binding	BPTF	IPI	UniProtKB:P62805	Human	PMID:21596426
Molecular Function	GO:0005515	protein binding	bptf	IPI	ZFIN:ZDB-GENE-070705-296	Zfish	PMID:26041917
Molecular Function	GO:0005515	protein binding	bptf	IPI	ZFIN:ZDB-GENE-990603-7	Zfish	PMID:26041917
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	bptf	IDA		Zfish	PMID:26041917
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	bptf	IMP	ZFIN:ZDB-MRPHLNO-150923-2,ZFIN:ZDB-MRPHLNO-150923-3	Zfish	PMID:26041917
Molecular Function	GO:0043565	sequence-specific DNA binding	BPTF	IDA		Human	PMID:10403843
Molecular Function	GO:0043565	sequence-specific DNA binding	BPTF	IMP		Human	PMID:10575013
Cellular Component	GO:1904949	ATPase complex	BPTF	IDA		Human	PMID:14609955
Cellular Component	GO:0044297	cell body	Bptf	IDA		Rat	PMID:11640947|RGD:9586055
Cellular Component	GO:0000785	chromatin	BPTF	IDA		Human	PMID:27141965
Cellular Component	GO:0005737	cytoplasm	Bptf	IDA		Rat	PMID:9378851|RGD:9586054
Cellular Component	GO:0030425	dendrite	Bptf	IDA		Rat	PMID:9378851|RGD:9586054
Cellular Component	GO:0070062	extracellular exosome	BPTF	HDA		Human	PMID:18570454
Cellular Component	GO:0043005	neuron projection	Bptf	IDA		Rat	PMID:11640947|RGD:9586055
Cellular Component	GO:0005654	nucleoplasm	BPTF	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	BPTF	IDA		Human	PMID:10403843
Cellular Component	GO:0005634	nucleus	BPTF	IDA		Human	PMID:14609955
Cellular Component	GO:0005634	nucleus	BPTF	IDA		Human	PMID:25593309
Cellular Component	GO:0005634	nucleus	Bptf	IDA		Rat	PMID:11640947|RGD:9586055
Cellular Component	GO:0016589	NURF complex	BPTF	IPI		Human	PMID:14609955
Cellular Component	GO:0016589	NURF complex	BPTF	IDA		Human	PMID:20850016
Cellular Component	GO:0048471	perinuclear region of cytoplasm	Bptf	IDA		Rat	PMID:11640947|RGD:9586055
Biological Process	GO:0009952	anterior/posterior pattern specification	Bptf	IMP	MGI:MGI:3823037	Mouse	PMID:18794365
Biological Process	GO:0009952	anterior/posterior pattern specification	Bptf	IMP	MGI:MGI:3841299	Mouse	PMID:18974875
Biological Process	GO:0007420	brain development	BPTF	IMP		Human	PMID:14609955
Biological Process	GO:1990090	cellular response to nerve growth factor stimulus	Bptf	IEP		Rat	PMID:11640947|RGD:9586055
Biological Process	GO:0006338	chromatin remodeling	BPTF	IDA		Human	PMID:14609955
Biological Process	GO:1904888	cranial skeletal system development	bptf	IMP	ZFIN:ZDB-CRISPR-180320-2	Zfish	PMID:28942966
Biological Process	GO:0001892	embryonic placenta development	Bptf	IMP	MGI:MGI:3823037	Mouse	PMID:18794365
Biological Process	GO:0007492	endoderm development	Bptf	IMP	MGI:MGI:3841299	Mouse	PMID:18974875
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	BPTF	IDA		Human	PMID:10727212
Biological Process	GO:0021999	neural plate anterior/posterior regionalization	bptf	IGI	ZFIN:ZDB-GENE-980526-332	Zfish	PMID:26041917
Biological Process	GO:0021999	neural plate anterior/posterior regionalization	bptf	IGI	ZFIN:ZDB-GENE-980526-332,ZFIN:ZDB-GENE-990415-198	Zfish	PMID:26041917
Biological Process	GO:0021999	neural plate anterior/posterior regionalization	bptf	IGI	ZFIN:ZDB-GENE-070705-296	Zfish	PMID:26041917
Biological Process	GO:0021999	neural plate anterior/posterior regionalization	bptf	IGI	ZFIN:ZDB-GENE-990415-198	Zfish	PMID:26041917
Biological Process	GO:0021999	neural plate anterior/posterior regionalization	bptf	IMP	ZFIN:ZDB-MRPHLNO-150923-2,ZFIN:ZDB-MRPHLNO-150923-3	Zfish	PMID:26041917
Biological Process	GO:0021999	neural plate anterior/posterior regionalization	bptf	IGI	ZFIN:ZDB-GENE-990603-7	Zfish	PMID:26041917
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	BPTF	IMP		Human	PMID:14609955
Biological Process	GO:0006355	regulation of DNA-templated transcription	BPTF	IDA		Human	PMID:14609955
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	BPTF	IMP		Human	PMID:10575013
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	bptf	IDA		Zfish	PMID:26041917
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	bptf	IMP	ZFIN:ZDB-MRPHLNO-150923-2,ZFIN:ZDB-MRPHLNO-150923-3	Zfish	PMID:26041917
Biological Process	GO:0009611	response to wounding	Bptf	IEP		Rat	PMID:9378851|RGD:9586054

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern