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Gene Expression Data
Assay Details
Assay
Reference: J:157819 Shimogori T, et al., A genomic atlas of mouse hypothalamic development. Nat Neurosci. 2010;13(6):767-75
Assay type: RNA in situ
MGI Accession ID: MGI:4452154
Gene symbol: Shh
Gene name: sonic hedgehog
Probe: MGC clone 69975
Probe preparation: Antisense labelled with fluorescein RNA
Visualized with: Alkaline phosphatase
Results
Specimen 6c: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Foxb1 (assay MGI:4450814).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted 6c Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted 6c Expression is present in the ventral telencephalon.
Specimen 6d: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Foxb1 (assay MGI:4450814).
Structure Level Pattern Image Note
TS20: hypothalamus Absent 6d There is no expression in the basal hypothalamus.
TS20: thalamus Present Regionally restricted 6d Expression is present in the zona limitans intrathalamica.
TS20: brain Present Regionally restricted 6d Expression is present in a region posterior to the diencephalon.
TS20: telencephalon Absent 6d There is no expression in the ventral telencephalon.
Specimen 6e: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Sim1 (assay MGI:4450888).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted 6e Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted 6e Expression is present in the ventral telencephalon.
Specimen 6f: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Sim1 (assay MGI:4450888).
Structure Level Pattern Image Note
TS20: hypothalamus Absent 6f There is no expression in the basal hypothalamus.
TS20: thalamus Present Regionally restricted 6f Expression is present in the zona limitans intrathalamica.
TS20: brain Present Regionally restricted 6f Expression is present in a region posterior to the diencephalon.
TS20: telencephalon Absent 6f There is no expression in the ventral telencephalon.
Specimen 6g: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Arx (assay MGI:4450750).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted 6g Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted 6g Expression is present in the ventral telencephalon.
Specimen 6h: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Arx (assay MGI:4450750).
Structure Level Pattern Image Note
TS20: hypothalamus Absent 6h There is no expression in the basal hypothalamus.
Specimen 6i: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx9 (assay MGI:4450767).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted 6i Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted 6i Expression is present in the ventral telencephalon.
Specimen 6j: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Lhx9 (assay MGI:4450767).
Structure Level Pattern Image Note
TS20: hypothalamus Absent 6j There is no expression in the basal hypothalamus.
Specimen 6k: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx1 (assay MGI:4450905).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted 6k Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted 6k Expression is present in the ventral telencephalon.
Specimen 6l: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Lhx1 (assay MGI:4450905).
Structure Level Pattern Image Note
TS20: hypothalamus Absent 6l There is no expression in the basal hypothalamus.
Specimen 6m: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx6 (assay MGI:4450765).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted 6m Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted 6m Expression is present in the ventral telencephalon.
Specimen 6n: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Lhx6 (assay MGI:4450765).
Structure Level Pattern Image Note
TS20: hypothalamus Absent 6n There is no expression in the basal hypothalamus.
TS20: thalamus Present Regionally restricted 6n Expression is present in the zona limitans intrathalamica.
TS20: brain Present Regionally restricted 6n Expression is present in a region posterior to the diencephalon.
TS20: telencephalon Absent 6n There is no expression in the ventral telencephalon.
Specimen S4a: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Irx5 (assay MGI:4450789).
Structure Level Pattern Image Note
TS19: forebrain Present S4_a
Specimen S4b: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Irx5 (assay MGI:4450789).
Structure Level Pattern Image Note
TS20: forebrain Present S4_b
Specimen S4c: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Irx5 (assay MGI:4450789).
Structure Level Pattern Image Note
TS22: forebrain Present S4_c
Specimen S4d: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Irx5 (assay MGI:4450789).
Structure Level Pattern Image Note
TS24: forebrain Present S4_d
Specimen S4e: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Foxb1 (assay MGI:4450814).
Structure Level Pattern Image Note
TS19: forebrain Present S4_e
Specimen S4f: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Foxb1 (assay MGI:4450814).
Structure Level Pattern Image Note
TS20: forebrain Present S4_f
Specimen S4g: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Foxb1 (assay MGI:4450814).
Structure Level Pattern Image Note
TS22: forebrain Present S4_g
Specimen S4h: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Foxb1 (assay MGI:4450814).
Structure Level Pattern Image Note
TS24: forebrain Present S4_h
Specimen S4i: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Lef1 (assay MGI:4450873).
Structure Level Pattern Image Note
TS19: forebrain Present S4_i
Specimen S4j: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Lef1 (assay MGI:4450873).
Structure Level Pattern Image Note
TS20: forebrain Present S4_j
Specimen S4k: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Lef1 (assay MGI:4450873).
Structure Level Pattern Image Note
TS22: forebrain Present S4_k
Specimen S4l: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Lef1 (assay MGI:4450873).
Structure Level Pattern Image Note
TS24: forebrain Present S4_l
Specimen S4m: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx6 (assay MGI:4450765).
Structure Level Pattern Image Note
TS19: forebrain Present S4_m
Specimen S4n: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx6 (assay MGI:4450765).
Structure Level Pattern Image Note
TS20: forebrain Present S4_n
Specimen S4o: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx6 (assay MGI:4450765).
Structure Level Pattern Image Note
TS22: forebrain Present S4_o
Specimen S4p: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx6 (assay MGI:4450765).
Structure Level Pattern Image Note
TS24: forebrain Present S4_p
Specimen S4q: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Pomc (assay MGI:4450886).
Structure Level Pattern Image Note
TS19: forebrain Present S4_q
Specimen S4r: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Pomc (assay MGI:4450886).
Structure Level Pattern Image Note
TS20: forebrain Present S4_r
Specimen S4s: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Pomc (assay MGI:4450886).
Structure Level Pattern Image Note
TS22: forebrain Present S4_s
Specimen S4t: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Pomc (assay MGI:4450886).
Structure Level Pattern Image Note
TS24: forebrain Present S4_t
Specimen S4u: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Nr5a1 (assay MGI:4452112).
Structure Level Pattern Image Note
TS19: forebrain Present S4_u
Specimen S4v: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Nr5a1 (assay MGI:4452112).
Structure Level Pattern Image Note
TS20: forebrain Present S4_v
Specimen S4w: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Nr5a1 (assay MGI:4452112).
Structure Level Pattern Image Note
TS22: forebrain Present S4_w
Specimen S4x: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Nr5a1 (assay MGI:4452112).
Structure Level Pattern Image Note
TS24: forebrain Present S4_x
Specimen S4y: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx8 (assay MGI:4450748).
Structure Level Pattern Image Note
TS19: forebrain Present S4_y
Specimen S4z: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx8 (assay MGI:4450748).
Structure Level Pattern Image Note
TS20: forebrain Present S4_z
Specimen S4aa: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx8 (assay MGI:4450748).
Structure Level Pattern Image Note
TS22: forebrain Present S4_aa
Specimen S4bb: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx8 (assay MGI:4450748).
Structure Level Pattern Image Note
TS24: forebrain Present S4_bb
Specimen S4cc: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Sim1 (assay MGI:4450888).
Structure Level Pattern Image Note
TS19: forebrain Present S4_cc
Specimen S4dd: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Sim1 (assay MGI:4450888).
Structure Level Pattern Image Note
TS20: forebrain Present S4_dd
Specimen S4ee: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Sim1 (assay MGI:4450888).
Structure Level Pattern Image Note
TS22: forebrain Present S4_ee
Specimen S4ff: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Sim1 (assay MGI:4450888).
Structure Level Pattern Image Note
TS24: forebrain Present S4_ff
Specimen S5a: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Nkx6-2 (assay MGI:4450786).
Structure Level Pattern Image Note
TS19: forebrain Present S5_a
Specimen S5b: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Nkx6-2 (assay MGI:4450786).
Structure Level Pattern Image Note
TS20: forebrain Present S5_b
Specimen S5c: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Nkx6-2 (assay MGI:4450786).
Structure Level Pattern Image Note
TS22: forebrain Present S5_c
Specimen S5d: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Nkx6-2 (assay MGI:4450786).
Structure Level Pattern Image Note
TS24: forebrain Present S5_d
Specimen S5e: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Gsx2 (assay MGI:4450867).
Structure Level Pattern Image Note
TS19: forebrain Present S5_e
Specimen S5f: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Gsx2 (assay MGI:4450867).
Structure Level Pattern Image Note
TS20: forebrain Present S5_f
Specimen S5g: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Gsx2 (assay MGI:4450867).
Structure Level Pattern Image Note
TS22: forebrain Present S5_g
Specimen S5h: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Gsx2 (assay MGI:4450867).
Structure Level Pattern Image Note
TS24: forebrain Present S5_h
Specimen S5i: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Rax (assay MGI:4450746).
Structure Level Pattern Image Note
TS19: forebrain Present S5_i
Specimen S5j: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Rax (assay MGI:4450746).
Structure Level Pattern Image Note
TS20: forebrain Present S5_j
Specimen S5k: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Rax (assay MGI:4450746).
Structure Level Pattern Image Note
TS22: forebrain Present S5_k
Specimen S5l: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Rax (assay MGI:4450746).
Structure Level Pattern Image Note
TS24: forebrain Present S5_l
Specimen S6a: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Irx5 (assay MGI:4450789).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted S6_a Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted S6_a Expression is present in the ventral telencephalon.
Specimen S6b: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Irx5 (assay MGI:4450789).
Structure Level Pattern Image Note
TS20: hypothalamus Absent S6_b There is no expression in the basal hypothalamus.
Specimen S6c: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Lef1 (assay MGI:4450873).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted S6_c Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted S6_c Expression is present in the ventral telencephalon.
Specimen S6d: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Lef1 (assay MGI:4450873).
Structure Level Pattern Image Note
TS20: hypothalamus Absent S6_d There is no expression in the basal hypothalamus.
Specimen S6e: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Nr5a1 (assay MGI:4452112).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted S6_e Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted S6_e Expression is present in the ventral telencephalon.
Specimen S6f: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Nr5a1 (assay MGI:4452112).
Structure Level Pattern Image Note
TS20: hypothalamus Absent S6_f There is no expression in the basal hypothalamus.
Specimen S6g: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Pomc (assay MGI:4450886).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted S6_g Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted S6_g Expression is present in the ventral telencephalon.
Specimen S6h: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Pomc (assay MGI:4450886).
Structure Level Pattern Image Note
TS20: hypothalamus Absent S6_h There is no expression in the basal hypothalamus.
Specimen S6i: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Nkx6-2 (assay MGI:4450786).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted S6_i Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted S6_i Expression is present in the ventral telencephalon.
Specimen S6j: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Nkx6-2 (assay MGI:4450786).
Structure Level Pattern Image Note
TS20: hypothalamus Absent S6_j There is no expression in the basal hypothalamus.
Specimen S6k: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Nkx2-1 (assay MGI:4450737).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted S6_k Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted S6_k Expression is present in the ventral telencephalon.
Specimen S6l: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Nkx2-1 (assay MGI:4450737).
Structure Level Pattern Image Note
TS20: hypothalamus Absent S6_l There is no expression in the basal hypothalamus.
Specimen S6m: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Gsx2 (assay MGI:4450867).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted S6_m Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted S6_m Expression is present in the ventral telencephalon.
Specimen S6n: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Gsx2 (assay MGI:4450867).
Structure Level Pattern Image Note
TS20: hypothalamus Absent S6_n There is no expression in the basal hypothalamus.
Specimen S6o: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Rax (assay MGI:4450746).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted S6_o Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted S6_o Expression is present in the ventral telencephalon.
Specimen S6p: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Rax (assay MGI:4450746).
Structure Level Pattern Image Note
TS20: hypothalamus Absent S6_p There is no expression in the basal hypothalamus.
Specimen S6q: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Foxg1 (assay MGI:4450784).
Structure Level Pattern Image Note
TS20: hypothalamus Present Regionally restricted S6_q Expression is present in the basal hypothalamus.
TS20: telencephalon Present Regionally restricted S6_q Expression is present in the ventral telencephalon.
Specimen S6r: embryonic day 12.5; Shhtm2Amc/Shhtm2Amc, Tg(Nkx2-1-cre)2Sand/0 (more )
Note: Conditional mutant. Double labeled: brown - Shh; blue - Foxg1 (assay MGI:4450784).
Structure Level Pattern Image Note
TS20: hypothalamus Absent S6_r There is no expression in the basal hypothalamus.
Specimen S7e: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx1 (assay MGI:4450905).
Structure Level Pattern Image Note
TS19: forebrain Present S7_e
Specimen S7f: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx1 (assay MGI:4450905).
Structure Level Pattern Image Note
TS20: forebrain Present S7_f
Specimen S7g: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx1 (assay MGI:4450905).
Structure Level Pattern Image Note
TS22: forebrain Present S7_g
Specimen S7h: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Lhx1 (assay MGI:4450905).
Structure Level Pattern Image Note
TS24: forebrain Present S7_h
Specimen S7i: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Igfbp5 (assay MGI:4450872).
Structure Level Pattern Image Note
TS19: forebrain Present S7_i
Specimen S7j: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Igfbp5 (assay MGI:4450872).
Structure Level Pattern Image Note
TS20: forebrain Present S7_j
Specimen S7k: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Igfbp5 (assay MGI:4450872).
Structure Level Pattern Image Note
TS22: forebrain Present S7_k
Specimen S7l: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Igfbp5 (assay MGI:4450872).
Structure Level Pattern Image Note
TS24: forebrain Present S7_l
Specimen S7m: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Id4 (assay MGI:4450899).
Structure Level Pattern Image Note
TS19: forebrain Present S7_m
Specimen S7n: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Id4 (assay MGI:4450899).
Structure Level Pattern Image Note
TS20: forebrain Present S7_n
Specimen S7o: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Id4 (assay MGI:4450899).
Structure Level Pattern Image Note
TS22: forebrain Present S7_o
Specimen S7p: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Id4 (assay MGI:4450899).
Structure Level Pattern Image Note
TS24: forebrain Present S7_p
Specimen S7q: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Rorb (assay MGI:4450778).
Structure Level Pattern Image Note
TS19: forebrain Present S7_q
Specimen S7r: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Rorb (assay MGI:4450778).
Structure Level Pattern Image Note
TS20: forebrain Present S7_r
Specimen S7s: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Rorb (assay MGI:4450778).
Structure Level Pattern Image Note
TS22: forebrain Present S7_s
Specimen S7t: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Rorb (assay MGI:4450778).
Structure Level Pattern Image Note
TS24: forebrain Present S7_t
Specimen S7u: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Sema6d (assay MGI:4450824).
Structure Level Pattern Image Note
TS19: forebrain Present S7_u
Specimen S7v: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Sema6d (assay MGI:4450824).
Structure Level Pattern Image Note
TS20: forebrain Present S7_v
Specimen S7w: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Sema6d (assay MGI:4450824).
Structure Level Pattern Image Note
TS22: forebrain Present S7_w
Specimen S7x: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Sema6d (assay MGI:4450824).
Structure Level Pattern Image Note
TS24: forebrain Present S7_x
Specimen S7y: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Rora (assay MGI:4450720).
Structure Level Pattern Image Note
TS19: forebrain Present S7_y
Specimen S7z: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Rora (assay MGI:4450720).
Structure Level Pattern Image Note
TS20: forebrain Present S7_z
Specimen S7aa: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Rora (assay MGI:4450720).
Structure Level Pattern Image Note
TS22: forebrain Present S7_aa
Specimen S7bb: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Rora (assay MGI:4450720).
Structure Level Pattern Image Note
TS24: forebrain Present S7_bb
Specimen S8a: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Fgf15 (assay MGI:4450749).
Structure Level Pattern Image Note
TS19: forebrain Present S8_a
Specimen S8b: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Fgf15 (assay MGI:4450749).
Structure Level Pattern Image Note
TS19: forebrain Present S8_b
Specimen S8c: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Fgf15 (assay MGI:4450749).
Structure Level Pattern Image Note
TS19: forebrain Present S8_c
Specimen S8d: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Fgf15 (assay MGI:4450749).
Structure Level Pattern Image Note
TS19: forebrain Present S8_d
Specimen S8f: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Nrg1 (assay MGI:4450868).
Structure Level Pattern Image Note
TS19: forebrain Present S8_f
Specimen S8g: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Nrg1 (assay MGI:4450868).
Structure Level Pattern Image Note
TS19: forebrain Present S8_g
Specimen S8h: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Nrg1 (assay MGI:4450868).
Structure Level Pattern Image Note
TS19: forebrain Present S8_h
Specimen S8i: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Nrg1 (assay MGI:4450868).
Structure Level Pattern Image Note
TS19: forebrain Present S8_i
Specimen S8k: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Dkk3 (assay MGI:4450787).
Structure Level Pattern Image Note
TS19: forebrain Present S8_k
Specimen S8l: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Dkk3 (assay MGI:4450787).
Structure Level Pattern Image Note
TS19: forebrain Present S8_l
Specimen S8m: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Dkk3 (assay MGI:4450787).
Structure Level Pattern Image Note
TS19: forebrain Present S8_m
Specimen S8n: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Dkk3 (assay MGI:4450787).
Structure Level Pattern Image Note
TS19: forebrain Present S8_n
Specimen S8p: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Wnt7a (assay MGI:4450897).
Structure Level Pattern Image Note
TS19: forebrain Present S8_p
Specimen S8q: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Wnt7a (assay MGI:4450897).
Structure Level Pattern Image Note
TS19: forebrain Present S8_q
Specimen S8r: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Wnt7a (assay MGI:4450897).
Structure Level Pattern Image Note
TS19: forebrain Present S8_r
Specimen S8s: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Wnt7a (assay MGI:4450897).
Structure Level Pattern Image Note
TS19: forebrain Present S8_s
Specimen S8u: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Wnt7b (assay MGI:4450898).
Structure Level Pattern Image Note
TS19: forebrain Present S8_u
Specimen S8v: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Wnt7b (assay MGI:4450898).
Structure Level Pattern Image Note
TS19: forebrain Present S8_v
Specimen S8w: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Wnt7b (assay MGI:4450898).
Structure Level Pattern Image Note
TS19: forebrain Present S8_w
Specimen S8x: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Wnt7b (assay MGI:4450898).
Structure Level Pattern Image Note
TS19: forebrain Present S8_x
Specimen S8z: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Igfbp5 (assay MGI:4450872).
Structure Level Pattern Image Note
TS19: forebrain Present S8_z
Specimen S8aa: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Igfbp5 (assay MGI:4450872).
Structure Level Pattern Image Note
TS19: forebrain Present S8_aa
Specimen S8bb: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Igfbp5 (assay MGI:4450872).
Structure Level Pattern Image Note
TS19: forebrain Present S8_bb
Specimen S8cc: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Igfbp5 (assay MGI:4450872).
Structure Level Pattern Image Note
TS19: forebrain Present S8_cc
Specimen S8ee: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Fst (assay MGI:4450860).
Structure Level Pattern Image Note
TS19: forebrain Present S8_ee
Specimen S8ff: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Fst (assay MGI:4450860).
Structure Level Pattern Image Note
TS19: forebrain Present S8_ff
Specimen S8gg: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Fst (assay MGI:4450860).
Structure Level Pattern Image Note
TS19: forebrain Present S8_gg
Specimen S8hh: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Fst (assay MGI:4450860).
Structure Level Pattern Image Note
TS19: forebrain Present S8_hh
Specimen S9f: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Foxd1 (assay MGI:4450783).
Structure Level Pattern Image Note
TS19: forebrain Present S9_f
Specimen S9g: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Foxd1 (assay MGI:4450783).
Structure Level Pattern Image Note
TS20: forebrain Present S9_g
Specimen S9h: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Foxd1 (assay MGI:4450783).
Structure Level Pattern Image Note
TS22: forebrain Present S9_h
Specimen S9i: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Foxd1 (assay MGI:4450783).
Structure Level Pattern Image Note
TS24: forebrain Present S9_i
Specimen S9j: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Igf2bp1 (assay MGI:4450792).
Structure Level Pattern Image Note
TS19: forebrain Present S9_j
Specimen S9k: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Igf2bp1 (assay MGI:4450792).
Structure Level Pattern Image Note
TS20: forebrain Present S9_k
Specimen S9l: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Igf2bp1 (assay MGI:4450792).
Structure Level Pattern Image Note
TS22: forebrain Present S9_l
Specimen S9m: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Igf2bp1 (assay MGI:4450792).
Structure Level Pattern Image Note
TS24: forebrain Present S9_m
Specimen S9n: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Rbpms2 (assay MGI:4450804).
Structure Level Pattern Image Note
TS19: forebrain Present S9_n
Specimen S9o: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Rbpms2 (assay MGI:4450804).
Structure Level Pattern Image Note
TS20: forebrain Present S9_o
Specimen S9p: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Rbpms2 (assay MGI:4450804).
Structure Level Pattern Image Note
TS22: forebrain Present S9_p
Specimen S9q: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Rbpms2 (assay MGI:4450804).
Structure Level Pattern Image Note
TS24: forebrain Present S9_q
Specimen S9r: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Shcbp1 (assay MGI:4450773).
Structure Level Pattern Image Note
TS19: forebrain Present S9_r
Specimen S9s: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Shcbp1 (assay MGI:4450773).
Structure Level Pattern Image Note
TS20: forebrain Present S9_s
Specimen S9t: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Shcbp1 (assay MGI:4450773).
Structure Level Pattern Image Note
TS22: forebrain Present S9_t
Specimen S9u: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Shcbp1 (assay MGI:4450773).
Structure Level Pattern Image Note
TS24: forebrain Present S9_u
Specimen S9v: embryonic day 11.5 (more )
Note: Double labeled: brown - Shh; blue - Ccnd1 (assay MGI:4450850).
Structure Level Pattern Image Note
TS19: forebrain Present S9_v
Specimen S9w: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Ccnd1 (assay MGI:4450850).
Structure Level Pattern Image Note
TS20: forebrain Present S9_w
Specimen S9x: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Ccnd1 (assay MGI:4450850).
Structure Level Pattern Image Note
TS22: forebrain Present S9_x
Specimen S9y: embryonic day 16.5 (more )
Note: Double labeled: brown - Shh; blue - Ccnd1 (assay MGI:4450850).
Structure Level Pattern Image Note
TS24: forebrain Present S9_y
Specimen S10a: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Rax (assay MGI:4450746).
Structure Level Pattern Image Note
TS22: forebrain Present S10_a
Specimen S10b: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Rax (assay MGI:4450746).
Structure Level Pattern Image Note
TS22: forebrain Present S10_b
Specimen S10c: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Rax (assay MGI:4450746).
Structure Level Pattern Image Note
TS22: forebrain Present S10_c
Specimen S10d: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Rax (assay MGI:4450746).
Structure Level Pattern Image Note
TS22: forebrain Present S10_d
Specimen S10e: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Rax (assay MGI:4450746).
Structure Level Pattern Image Note
TS22: forebrain Present S10_e
Specimen S10f: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Gpr50 (assay MGI:4450769).
Structure Level Pattern Image Note
TS22: forebrain Present S10_f
Specimen S10g: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Gpr50 (assay MGI:4450769).
Structure Level Pattern Image Note
TS22: forebrain Present S10_g
Specimen S10h: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Gpr50 (assay MGI:4450769).
Structure Level Pattern Image Note
TS22: forebrain Present S10_h
Specimen S10i: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Gpr50 (assay MGI:4450769).
Structure Level Pattern Image Note
TS22: forebrain Present S10_i
Specimen S10j: embryonic day 14.5 (more )
Note: Double labeled: brown - Shh; blue - Gpr50 (assay MGI:4450769).
Structure Level Pattern Image Note
TS22: forebrain Present S10_j
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/14/2024
MGI 6.23 		The Jackson Laboratory