Ccdc200 MGI Mouse Gene Detail - MGI:3650266 - coiled coil domain containing 200

Sequence Map

Chr11:101484569-101490082 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650266	protein coding gene	Chr11:101484569-101490140 (-)
129S1/SvImJ	ENSMUSG00200049127	protein coding gene	Chr11:98754732-98760242 (-)
A/J	ENSMUSG00195051491	protein coding gene	Chr11:98448354-98453863 (-)
AKR/J	ENSMUSG00220048429	protein coding gene	Chr11:98684981-98690494 (-)
BALB/cJ	ENSMUSG00180047863	protein coding gene	Chr11:98817201-98822714 (-)
C3H/HeJ	ENSMUSG00175043267	protein coding gene	Chr11:98728265-98733777 (-)
C57BL/6NJ	ENSMUSG00215052869	protein coding gene	Chr11:98304604-98310118 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002708	antisense lncRNA gene	Chr11:97471963-97477841 (-)
CAST/EiJ	ENSTCUG00005049505	protein coding gene	Chr11:98224214-98229885 (-)
CBA/J	ENSMUSG00210052382	protein coding gene	Chr11:98450445-98455958 (-)
DBA/2J	ENSMUSG00185045034	protein coding gene	Chr11:98778124-98783634 (-)
FVB/NJ	ENSMUSG00205048324	protein coding gene	Chr11:98635304-98640817 (-)
JF1/MsJ	ENSUMUG00000026037	protein coding gene	Chr11:99043084-99048592 (-)
LP/J	ENSMUSG00230045415	protein coding gene	Chr11:99830759-99836269 (-)
NOD/ShiLtJ	ENSMUSG00190037973	protein coding gene	Chr11:98816691-98822201 (-)
NZO/HlLtJ	ENSMUSG00225051836	protein coding gene	Chr11:101866666-101872162 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010047430	protein coding gene	Chr11:99067099-99072568 (-)
WSB/EiJ	ENSIUOG00005044923	protein coding gene	Chr11:98578554-98584066 (-)

Vertebrate Orthology Source

Alliance of Genome Resources

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	ENSMUSG00000085486	Ensembl Gene Model \| MGI Sequence Detail	5514	C57BL/6J	± kb
transcript	ENSMUST00000209862	Ensembl \| MGI Sequence Detail	573	Not Applicable
polypeptide	ENSMUSP00000148108	Ensembl \| MGI Sequence Detail	172	Not Applicable

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UniProt

2 Sequences
InterPro Domains

IPR063768 Coiled-coil domain-containing protein 200, coiled-coil domain

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MGI:7286227

Summaries

All 17

Phenotypes 7
Earliest

J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
Latest

J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Ccdc200:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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