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Glcci1 Gene Detail
Summary
  • Symbol
    Glcci1
  • Name
    glucocorticoid induced transcript 1
  • Synonyms
    2310047L21Rik, A130036A18Rik, Fam117c, GIG18, Tssn1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2179717
    NCBI Gene: 170772
  • Alliance
    genome feature page
  • Transcription Start Sites
    17 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:8509600-8597548 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 4.38 cM, cytoband A1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2064 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2179717
 protein coding gene Chr6:8509600-8597549 (+)
129S1/SvImJ ENSMUSG00200001442
 protein coding gene Chr6:5602766-5681992 (+)
A/J ENSMUSG00195001855
 protein coding gene Chr6:5494378-5581593 (+)
AKR/J ENSMUSG00220019854
 protein coding gene Chr6:5402683-5489897 (+)
BALB/cJ ENSMUSG00180001345
 protein coding gene Chr6:5607280-5695232 (+)
C3H/HeJ ENSMUSG00175006712
 protein coding gene Chr6:5435981-5523926 (+)
C57BL/6NJ ENSMUSG00215008243
 protein coding gene Chr6:5565104-5653059 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028099
 protein coding gene Chr6:4769693-4846388 (+)
CAST/EiJ ENSTCUG00005025376
 protein coding gene Chr6:5424386-5505268 (+)
CBA/J ENSMUSG00210021059
 protein coding gene Chr6:5372643-5460594 (+)
DBA/2J ENSMUSG00185024595
 protein coding gene Chr6:5586470-5673679 (+)
FVB/NJ ENSMUSG00205013023
 protein coding gene Chr6:5602569-5689765 (+)
JF1/MsJ ENSUMUG00000010437
 protein coding gene Chr6:5536350-5615570 (+)
LP/J ENSMUSG00230014054
 protein coding gene Chr6:6586011-6673221 (+)
NOD/ShiLtJ ENSMUSG00190016446
 protein coding gene Chr6:5314199-5401407 (+)
NZO/HlLtJ ENSMUSG00225017329
 protein coding gene Chr6:8417433-8504642 (+)
PWK/PhJ ENSLUMG00010023959
 protein coding gene Chr6:5305161-5384345 (+)
SPRET/EiJ ENSMSPG00010002622
 protein coding gene Chr6:5321068-5399585 (+)
WSB/EiJ ENSIUOG00005004054
 protein coding gene Chr6:5606857-5694809 (+)



Homology
more
  • Human Ortholog
    GLCCI1, glucocorticoid induced 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GLCCI1, glucocorticoid induced 1
  • Synonyms
    FAM117C, GCTR, GIG18, TSSN1
  • Links
    NCBI Gene ID: 113263
    UniProt: Q86VQ1

  • Chr Location
    7p21.3; chr7:7968796-8094272 (+)  GRCh38
Human Diseases
more
  • Diseases
    4 with human GLCCI1 associations

Human Disease Mouse Models
      
IDs
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    731
  • Tissues
    49
  • cDNA Data
    24
  • Literature Summary
    13
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000029638 Ensembl Gene Model | MGI Sequence Detail 87949 C57BL/6J ±  kb
transcript ENSMUST00000064285 Ensembl | MGI Sequence Detail 6200 Not Applicable  
polypeptide ENSMUSP00000069444 Ensembl | MGI Sequence Detail 538 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 32
    cDNA 26
    Primer pair 5
    Other 1
    Antibodies 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:1923716, MGI:2384658, MGI:2442244
References
more
  • Summaries
    All 44
    Developmental Gene Expression 13
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:391693 Ge H, et al., GLCCI1-Deficiency Facilitates Persistent Eosinophilic Lung Inflammation in Asthma via Upregulation of CCL5. FASEB J. 2026 Jan 15;40(1):e71389
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory