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Snhg16 Gene Detail
Summary
  • Symbol
    Snhg16
  • Name
    small nucleolar RNA host gene 16
  • Synonyms
    1810032O08Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1913543
    NCBI Gene: 66293
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:116562486-116566624 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 81.49 cM, cytoband E2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    287 from dbSNP Build 142
  • Strain Annotations
    27
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913543
 lncRNA gene Chr11:116561743-116581173 (+)
129S1/SvImJ ENSMUSG00200049488
 protein coding gene Chr11:113922204-113935612 (+)
129S1/SvImJ ENSMUSG00200052560
 lncRNA gene Chr11:113922276-113935757 (+)
A/J ENSMUSG00195033270
 lncRNA gene Chr11:113630656-113644416 (+)
AKR/J ENSMUSG00220031158
 lncRNA gene Chr11:113733367-113747111 (+)
AKR/J ENSMUSG00220026242
 protein coding gene Chr11:113733313-113738463 (+)
BALB/cJ ENSMUSG00180052713
 lncRNA gene Chr11:113923707-113937180 (+)
BALB/cJ ENSMUSG00180051385
 protein coding gene Chr11:113923653-113928521 (+)
C3H/HeJ ENSMUSG00175046475
 lncRNA gene Chr11:113882395-113896153 (+)
C57BL/6NJ ENSMUSG00215043580
 protein coding gene Chr11:113422607-113427474 (+)
C57BL/6NJ ENSMUSG00215046941
 lncRNA gene Chr11:113422661-113436130 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017452
 protein coding gene Chr11:112539220-112543263 (+)
CAST/EiJ ENSTCUG00005036612
 lncRNA gene Chr11:113281900-113295357 (+)
CBA/J ENSMUSG00210050977
 lncRNA gene Chr11:113602373-113616132 (+)
DBA/2J ENSMUSG00185022730
 protein coding gene Chr11:113915090-113919957 (+)
DBA/2J ENSMUSG00185027923
 lncRNA gene Chr11:113915144-113928614 (+)
FVB/NJ ENSMUSG00205044713
 protein coding gene Chr11:113728676-113733825 (+)
FVB/NJ ENSMUSG00205047549
 lncRNA gene Chr11:113728730-113742473 (+)
JF1/MsJ ENSUMUG00000054804
 lncRNA gene Chr11:114184525-114197963 (+)
LP/J ENSMUSG00230051391
 lncRNA gene Chr11:114975643-114989401 (+)
NOD/ShiLtJ ENSMUSG00190049603
 lncRNA gene Chr11:113945875-113959356 (+)
NOD/ShiLtJ ENSMUSG00190036527
 protein coding gene Chr11:113945803-113959211 (+)
NZO/HlLtJ ENSMUSG00225053364
 lncRNA gene Chr11:117024229-117037710 (+)
NZO/HlLtJ ENSMUSG00225050483
 protein coding gene Chr11:117024157-117037565 (+)
PWK/PhJ ENSLUMG00010024050
 lncRNA gene Chr11:113700504-113714119 (+)
SPRET/EiJ ENSMSPG00010045606
 lncRNA gene Chr11:114227042-114240882 (+)
WSB/EiJ ENSIUOG00005048045
 lncRNA gene Chr11:113687712-113701473 (+)



Homology
more
  • Human Ortholog
    SNHG16, small nucleolar RNA host gene 16
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG16, small nucleolar RNA host gene 16
  • Synonyms
    ELNAT1, Nbla10727, Nbla12061, ncRAN
  • Links
    NCBI Gene ID: 100507246

  • Chr Location
    chr17:76557191-76714384 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    599
  • Tissues
    1
  • cDNA Data
    6
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    66
  • RefSeq
    3
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 66293 NCBI Gene Model | MGI Sequence Detail 4139 C57BL/6J ±  kb
transcript NR_027821 RefSeq | MGI Sequence Detail 2014 C57BL/6  
polypeptide Q8C2B7 UniProt | EBI | MGI Sequence Detail 102 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 7
    cDNA 6
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:6297107
References
more
  • Summaries
    All 23
    Developmental Gene Expression 2
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:363164 Zhu S, et al., Fine-tuning of Wnt signaling by RNA surveillance factor Smg5 in the mouse craniofacial development. iScience. 2025 Mar 21;28(3):111972
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory