About   Help   FAQ
Zfhx3 Gene Detail
Summary
  • Symbol
    Zfhx3
  • Name
    zinc finger homeobox 3
  • Synonyms
    A230102L03Rik, Atbf1, WBP9
  • Feature Type
    protein coding gene
  • IDs
    MGI:99948
    NCBI Gene: 11906
  • Gene Overview
    MyGene.info: ZFHX3
  • Alliance
    gene page
Location & Maps
more
  • Sequence Map
    Chr8:108703100-108961630 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      258531 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 56.02 cM, cytoband E1
  • Mapping Data
    4 experiments
Homology
more
  • Human Ortholog
    ZFHX3, zinc finger homeobox 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ZFHX3, zinc finger homeobox 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATBF1, ATBT, ZNF927
  • Links
    NCBI Gene ID: 463
    neXtProt AC: NX_Q15911
    UniProt: Q15911

  • Chr Location
    16q22.2-q22.3; chr16:72782885-73058635 (-)  GRCh38.p7
  • HomoloGene
    Vertebrate Homology Class 21366
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ZFHX3
  • Gene Tree
    Zfhx3
Human Diseases
more
  • Diseases
    1 with human ZFHX3 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotypes from 4 alleles in 6 genetic backgrounds
    1 phenotype from multigenic genotypes
    1 images
    14 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a gene trapped allele exhibit normal initial pituitary development but reduced GH and TSH-beta staining within the pituitary by E17.5. Mice homozygous for a knock-out allele exhibit prenatal lethality. Mice heterozygous for the same allele exhibit partial postnatal lethality, decreased body size and prolonged conception time.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    30
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    369
  • Tissues
    154
  • cDNA Data
    21
  • Literature Summary
    28
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic OTTMUSG00000041077 VEGA Gene Model | MGI Sequence Detail 258531 C57BL/6J ±  kb
    transcript OTTMUST00000107189 VEGA | MGI Sequence Detail 16433 Not Applicable  
    polypeptide OTTMUSP00000059856 VEGA | MGI Sequence Detail 3723 Not Applicable  
    For the selected sequence
    Polymorphisms
    less
    • SNPs within 2kb
      1176 from dbSNP Build 142
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 30
      Genomic 3
      cDNA 22
      Primer pair 4
      Other 1

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGD-MRK-16751, MGI:1915410, MGI:2679553
    References
    more
    • Summaries
      All 69
      Developmental Gene Expression 28
      Gene Ontology 7
      Phenotypes 14
    • Earliest
      J:17985 Ido A, et al., Activation of ATBF1, a multiple-homeodomain zinc-finger gene, during neuronal differentiation of murine embryonal carcinoma cells. Dev Biol. 1994 May;163(1):184-7
    • Latest
      J:261809 Mayer C, et al., Developmental diversification of cortical inhibitory interneurons. Nature. 2018 Mar 22;555(7697):457-462
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.     		last database update
    07/10/2018
    MGI 6.12     		The Jackson Laboratory