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Lamc2 Gene Detail
Summary
  • Symbol
    Lamc2
  • Name
    laminin, gamma 2
  • Synonyms
    nicein, 100kDa
  • Feature Type
    protein coding gene
  • IDs
    MGI:99913
    NCBI Gene: 16782
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:153122756-153186447 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 65.26 cM, cytoband H1
  • Mapping Data
    15 experiments
Strain
Comparison
more
  • SNPs within 2kb
    848 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_99913
protein coding gene Chr1:153122756-153186447 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016594
protein coding gene Chr1:157917320-157991328 (-)
A/J MGP_AJ_G0016576
protein coding gene Chr1:151552326-151616959 (-)
AKR/J MGP_AKRJ_G0016541
protein coding gene Chr1:156242284-156312869 (-)
BALB/cJ MGP_BALBcJ_G0016536
protein coding gene Chr1:152119674-152185505 (-)
C3H/HeJ MGP_C3HHeJ_G0016361
protein coding gene Chr1:156342588-156410042 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016997
protein coding gene Chr1:163375286-163447458 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014706
protein coding gene Chr1:143866178-143928634 (-)
CAST/EiJ MGP_CASTEiJ_G0015940
protein coding gene Chr1:155848422-155915639 (-)
CBA/J MGP_CBAJ_G0016335
protein coding gene Chr1:169135011-169201924 (-)
DBA/2J MGP_DBA2J_G0016441
protein coding gene Chr1:150569135-150633852 (-)
FVB/NJ MGP_FVBNJ_G0016439
protein coding gene Chr1:149054141-149118449 (-)
LP/J MGP_LPJ_G0016512
protein coding gene Chr1:159035911-159103914 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016465
protein coding gene Chr1:176765905-176833840 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017033
protein coding gene Chr1:156026282-156093043 (-)
PWK/PhJ MGP_PWKPhJ_G0015726
protein coding gene Chr1:149593292-149660637 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015513
protein coding gene Chr1:154820239-154888459 (-)
WSB/EiJ MGP_WSBEiJ_G0016003
protein coding gene Chr1:156083201-156153287 (-)



Homology
more
  • Human Ortholog
    LAMC2, laminin subunit gamma 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    LAMC2, laminin subunit gamma 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    B2T, BM600, CSF, EBR2, EBR2A, LAMB2T, LAMNB2
  • Links
    NCBI Gene ID: 3918
    neXtProt AC: NX_Q13753
    UniProt: Q13753

  • Chr Location
    1q25.3; chr1:183186039-183245127 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 4062
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: LAMC2
  • Gene Tree
Human Diseases
more
  • Diseases
    2 with Lamc2 mouse models; 2 with human LAMC2 associations

Human Disease Mouse Models
      
IDs
View 1 model
IDs
View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    2 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    27 phenotypes from 2 alleles in 4 genetic backgrounds
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for disruptions in this gene display abnormalities in cell:cell adhesion involving epithelial cells.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 16782 NCBI Gene Model | MGI Sequence Detail 63692 C57BL/6J ±  kb
    transcript NM_008485 RefSeq | MGI Sequence Detail 5182 C57BL/6  
    polypeptide Q61092 UniProt | EBI | MGI Sequence Detail 1191 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 50
      Genomic 2
      cDNA 41
      Primer pair 7

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-16711, MGI:2138115
    References
    more
    • Summaries
      All 94
      Developmental Gene Expression 45
      Diseases 2
      Gene Ontology 9
      Phenotypes 12
    • Earliest
      J:17618 Aberdam D, et al., Assignment of mouse nicein genes to chromosomes 1 and 18. Mamm Genome. 1994 Apr;5(4):229-33
    • Latest
      J:251718 Pietila I, et al., Wnt5a Deficiency Leads to Anomalies in Ureteric Tree Development, Tubular Epithelial Cell Organization and Basement Membrane Integrity Pointing to a Role in Kidney Collecting Duct Patterning. PLoS One. 2016;11(1):e0147171

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/13/2018
    MGI 6.13
    The Jackson Laboratory