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Syt2 Gene Detail
Summary
  • Symbol
    Syt2
  • Name
    synaptotagmin II
  • Feature Type
    protein coding gene
  • IDs
    MGI:99666
    NCBI Gene: 20980
  • Gene Overview
    MyGene.info: SYT2
  • Alliance
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:134646564-134753149 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 58.24 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1504 from dbSNP Build 142
  • Strain Annotations
    15
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_99666
protein coding gene Chr1:134646564-134762593 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016512
protein coding gene Chr1:138337068-138466112 (+)
A/J MGP_AJ_G0016495
protein coding gene Chr1:133119800-133241305 (+)
AKR/J MGP_AKRJ_G0016460
protein coding gene Chr1:137099043-137218668 (+)
BALB/cJ MGP_BALBcJ_G0016455
protein coding gene Chr1:133446111-133563591 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0016916
protein coding gene Chr1:143370114-143492869 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014627
protein coding gene Chr1:126246620-126362618 (+)
CAST/EiJ MGP_CASTEiJ_G0015861
protein coding gene Chr1:136249024-136370097 (+)
CBA/J MGP_CBAJ_G0016254
protein coding gene Chr1:148312851-148438189 (+)
DBA/2J MGP_DBA2J_G0016360
protein coding gene Chr1:132127270-132245613 (+)
FVB/NJ MGP_FVBNJ_G0016359
protein coding gene Chr1:130763911-130883913 (+)
LP/J MGP_LPJ_G0016431
protein coding gene Chr1:139599048-139722600 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016384
protein coding gene Chr1:154013234-154139758 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016952
protein coding gene Chr1:136833422-136952775 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0015924
protein coding gene Chr1:136855524-136979770 (+)



Homology
more
  • Human Ortholog
    SYT2, synaptotagmin 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SYT2, synaptotagmin 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CMS7, MYSPC, SytII
  • Links
    NCBI Gene ID: 127833
    neXtProt AC: NX_Q8N9I0
    UniProt: Q8N9I0

  • Chr Location
    1q32.1; chr1:202590596-202710444 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human SYT2 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    18 phenotypes from 4 alleles in 4 genetic backgrounds
    26 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for an ENU-induced allele are viable but sterile, weigh less and show ataxia and altered spontaneous and Ca2+-evoked neurotransmitter release. Mice homozygous for a null allele die at weaning showing growth arrest, motor dysfunction and impaired Ca2+-evoked neurotransmitter release.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 20980 NCBI Gene Model | MGI Sequence Detail 106586 C57BL/6J ±  kb
    transcript NM_009307 RefSeq | MGI Sequence Detail 7202 C57BL/6  
    polypeptide P46097 UniProt | EBI | MGI Sequence Detail 422 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 15
      cDNA 13
      Primer pair 1
      Other 1

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGD-MRK-16451, MGI:2138727
    References
    more
    • Summaries
      All 97
      Developmental Gene Expression 24
      Gene Ontology 17
      Phenotypes 26
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:268413 Wamsley B, et al., Rbfox1 Mediates Cell-type-Specific Splicing in Cortical Interneurons. Neuron. 2018 Nov 21;100(4):846-859.e7

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    02/12/2019
    MGI 6.13
    The Jackson Laboratory