Sox11
Gene Detail

Symbol

Name
ID

Sox11
SRY (sex determining region Y)-box 11
MGI:98359

Synonyms

1110038H03Rik, 6230403H02Rik, end1

Feature Type

protein coding gene

Genetic Map

Chromosome 12
9.95 cM, cytoband A3
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr12:27334264-27342574 bp, - strand From VEGA annotation of GRCm38   8311 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:37733  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: SOX-12/11/4a protein
Gene Tree: Sox11

Human
homologs

Human Homolog		SOX11, SRY (sex determining region Y)-box 11
NCBI Gene ID		6664
neXtProt AC		NX_P35716
Human Synonyms		MRD27
Human Chr (Location)		2p25; chr2:5692667-5701385 (+)  GRCh38
Disease Associations		(1) Diseases Associated with Human SOX11

Mutations,
alleles, and
phenotypes

All mutations/alleles(7) : Targeted(7)
Incidental mutations (data from Mutagenetix , APF )
 

Homozygous null mice display neonatal lethality with impaired ossification and impaired development of the heart, lung, spleen, stomach, skeleton and pancreas. Mice homozygous for a different knock-out allele exhibit abnormal nervous system development and complete neonatal lethality.

 

Interactions

Sox11 interacts with 263 markers (Mir7-1, Mir10a, Mir17, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (80 annotations)

Process	cardiac ventricle formation, cell differentiation, ...
Component	cytoplasm, nucleus
Function	DNA binding, enhancer sequence-specific DNA binding, ...

External Resources: FuncBase

Expression

Literature Summary: (58 records)

Data Summary: Results (369)    Tissues (281)    Images (54)    Tissue x Stage Matrix (view)

Assay Type	Results
RNA in situ	240
Northern blot	2
RT-PCR	127

cDNA source data(28)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas

Molecular
reagents

All nucleic(40) cDNA(32) Primer pair(8)
Microarray probesets(8)

Other database
links

VEGA Gene Model	OTTMUSG00000021163 (Evidence)
Ensembl Gene Model	ENSMUSG00000063632 (Evidence)
Entrez Gene	20666 (Evidence)
DFCI	TC1579106, TC1586225, TC1596797, TC1604073, TC1639944, TC1650282, TC1665342, TC1777221
DoTS	DT.525047, DT.103571478, DT.529295, DT.94260399, DT.99841910
NIA Mouse Gene Index	U070418, U367574
Consensus CDS Project	CCDS25849.1
International Mouse Knockout Project Status	Sox11

Sequences

Length	Strain/Species
genomic	OTTMUSG00000021163	VEGA Gene Model | MGI Sequence Detail	8311	C57BL/6J
transcript	OTTMUST00000050139	VEGA | MGI Sequence Detail	8311	Not Applicable
polypeptide	OTTMUSP00000023364	VEGA | MGI Sequence Detail	395	Not Applicable

All sequences(52) RefSeq(2) UniProt(2)

Polymorphisms

SNPs within 2kb(62 from dbSNP Build 137)

Protein-related
information

Resource	ID	Description
InterPro	IPR009071	High mobility group (HMG) box domain
InterPro	IPR017386	Transcription factor SOX-12/11/4a
Protein Ontology	PR:000015419	transcription factor SOX-11

References

(Earliest) J:4011 Wright EM, et al., Seven new members of the Sox gene family expressed during mouse development. Nucleic Acids Res. 1993 Feb 11;21(3):744
(Latest) J:217198 Pamnani M, et al., Study of promoter DNA methylation of Sox11 and its correlation with tissue-specific expression in the laboratory mouse. Gene. 2014 Nov 15;552(1):133-9
All references(103)

Other
accession IDs

MGD-MRK-14498, MGI:1913439, MGI:1915029, MGI:2144888