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Snrpe
Gene Detail
Symbol

Name
ID
Snrpe
small nuclear ribonucleoprotein E
MGI:98346
Feature Type
protein coding gene
Genetic Map
Chromosome 1
57.94 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:133603871-133610291 bp, - strand
From VEGA annotation of GRCm38

  6421 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:37729  Vertebrate Homology Class
1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Snrpe

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Chemically induced (ENU)(1) Gene trapped(2)
Incidental mutations (data from Mutagenetix , APF )
 
Mice heterozygous for an ENU-induced mutation display severely decreased testis weight and reduced spermatogenesis.
 
Phenotype Images(1)
Interactions
Snrpe interacts with 59 markers (Mir1b, Mir7-1, Mir10a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process mRNA processing, mRNA splicing, via spliceosome, ...
Component cytoplasm, nucleus, ...
Function RNA binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (54)    Tissues (53)    Images (15)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 52
RT-PCR 2
cDNA source data(81)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(84) Genomic(2) cDNA(81) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000035312 (Evidence)
Ensembl Gene ModelENSMUSG00000090553 (Evidence)
Entrez Gene20643 (Evidence)
UniGene249110
DFCITC1575551, TC1673965
DoTSDT.494592, DT.55183699, DT.97374160
NIA Mouse Gene IndexU021772, U123451
Consensus CDS ProjectCCDS48364.1
International Mouse Knockout Project StatusSnrpe
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035312 VEGA Gene Model | MGI Sequence Detail 6421 C57BL/6J ±  kb
transcript OTTMUST00000090098 VEGA | MGI Sequence Detail 503 Not Applicable 
polypeptide OTTMUSP00000049358 VEGA | MGI Sequence Detail 92 Not Applicable 

For the selected sequences
All sequences(56) RefSeq(2) UniProt(9)
Polymorphisms
SNPs within 2kb(38 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010920 Like-Sm (LSM) domain
InterPro IPR001163 Ribonucleoprotein LSM domain
InterPro IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type
InterPro IPR027078 Small nuclear ribonucleoprotein E
Protein Ontology PR:000015346 small nuclear ribonucleoprotein E
References
(Earliest) J:3538 Fautsch MP, et al., Conservation of coding and transcriptional control sequences within the snRNP E protein gene. Genomics. 1992 Dec;14(4):883-90
(Latest) J:179895 Weiss J, et al., ENU mutagenesis in mice identifies candidate genes for hypogonadism. Mamm Genome. 2012 Jan 19;
All references(34)
Other
accession IDs
MGD-MRK-14476, MGI:2138653, MGI:2139120

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory