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Snrpe
Gene Detail
 Symbol
Name
ID
Snrpe
small nuclear ribonucleoprotein E
MGI:98346
Feature Type protein coding gene
Genetic Map
Chromosome 1
57.94 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:133603871-133610291 bp, - strand
From VEGA annotation of GRCm38

  6421 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:37729  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Snrpe

Human
homologs
Human Homolog SNRPE, small nuclear ribonucleoprotein polypeptide E
NCBI Gene ID 6635
neXtProt AC  NX_P62304
Human Synonyms  B-raf, HYPT11, Sm-E, SME
Human Chr (Location)  1q32; chr1:203861612-203871152 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human SNRPE
Alleles
and
phenotypes
All alleles(3) : Gene trapped(2) Chemically induced(1)
 
Mice heterozygous for an ENU-induced mutation display severely decreased testis weight and reduced spermatogenesis.
 
Phenotype Images(1)
Gene Ontology
(GO)
classifications
All GO classifications: (20 annotations)
Process hair cycle, mRNA processing, ...
Component catalytic step 2 spliceosome, cytoplasm, ...
Function RNA binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (54)    Tissues (45)    Images (15)
Theiler Stages: 19, 21, 23, 28
Assay TypeResults
RNA in situ 52
RT-PCR 2
cDNA source data(81)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(84) Genomic(2) cDNA(81) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000035312 (Evidence)
Ensembl Gene ModelENSMUSG00000090553 (Evidence)
Entrez Gene20643 (Evidence)
UniGene249110
DFCITC1575551, TC1673965
DoTSDT.494592, DT.55183699, DT.97374160
NIA Mouse Gene IndexU021772, U123451
Consensus CDS ProjectCCDS48364.1
International Mouse Knockout Project StatusSnrpe
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035312 VEGA Gene Model | MGI Sequence Detail 6421 C57BL/6J ±  kb
transcript OTTMUST00000090098 VEGA | MGI Sequence Detail 503 Not Applicable 
polypeptide OTTMUSP00000049358 VEGA | MGI Sequence Detail 92 Not Applicable 

For the selected sequences
All sequences(52) RefSeq(2) UniProt(5)
Polymorphisms SNPs within 2kb(38 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010920 Like-Sm (LSM) domain
InterPro IPR001163 Ribonucleoprotein LSM domain
InterPro IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type
InterPro IPR027078 Small nuclear ribonucleoprotein E
Protein Ontology PR:000015346 small nuclear ribonucleoprotein E
References (Earliest) J:3538 Fautsch MP, et al., Conservation of coding and transcriptional control sequences within the snRNP E protein gene. Genomics. 1992 Dec;14(4):883-90
(Latest) J:179895 Weiss J, et al., ENU mutagenesis in mice identifies candidate genes for hypogonadism. Mamm Genome. 2012 Jan 19;
All references(34)
Other
accession IDs
MGD-MRK-14476, MGI:2138653, MGI:2139120

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory