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Ccl5 Gene Detail
Summary
  • Symbol
    Ccl5
  • Name
    chemokine (C-C motif) ligand 5
  • Synonyms
    MuRantes, RANTES, Scya5, SISd, TCP228
  • Feature Type
    protein coding gene
  • IDs
    MGI:98262
    NCBI Gene: 20304
  • Gene Overview
    MyGene.info: CCL5
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:83525778-83530518 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 50.66 cM
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • SNPs within 2kb
    29 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98262
protein coding gene Chr11:83525778-83530518 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018852
protein coding gene Chr11:84859467-84864213 (-)
A/J MGP_AJ_G0018819
protein coding gene Chr11:81635597-81640343 (-)
AKR/J MGP_AKRJ_G0018789
protein coding gene Chr11:84076504-84081258 (-)
BALB/cJ MGP_BALBcJ_G0018792
protein coding gene Chr11:82048224-82052964 (-)
C3H/HeJ MGP_C3HHeJ_G0018606
protein coding gene Chr11:84123470-84128216 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019244
protein coding gene Chr11:87455568-87460312 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016878
protein coding gene Chr11:78765545-78769900 (-)
CAST/EiJ MGP_CASTEiJ_G0018161
protein coding gene Chr11:84707303-84711972 (-)
CBA/J MGP_CBAJ_G0018577
protein coding gene Chr11:91231089-91235835 (-)
DBA/2J MGP_DBA2J_G0018685
protein coding gene Chr11:81236144-81240898 (-)
FVB/NJ MGP_FVBNJ_G0018674
protein coding gene Chr11:80722341-80727085 (-)
LP/J MGP_LPJ_G0018755
protein coding gene Chr11:85419435-85424181 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018701
protein coding gene Chr11:91400751-91405499 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019284
protein coding gene Chr11:84339823-84344576 (-)
PWK/PhJ MGP_PWKPhJ_G0017930
protein coding gene Chr11:81996423-82001292 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017722
protein coding gene Chr11:83879070-83883757 (-)
WSB/EiJ MGP_WSBEiJ_G0018212
protein coding gene Chr11:84201241-84206003 (-)



Homology
more
  • Human Ortholog
    CCL5, C-C motif chemokine ligand 5
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CCL5, C-C motif chemokine ligand 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    D17S136E, eoCP, RANTES, SCYA5, SISd, SIS-delta, TCP228
  • Links
    NCBI Gene ID: 6352
    neXtProt AC: NX_P13501
    UniProt: P13501

  • Chr Location
    17q12; chr17:35871491-35880373 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    38 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Targeted
    5
  • Genomic Mutations
    2 involving Ccl5
  • Find Mice (IMSR)
Homozygous mutation of this gene results in decreased ear and footpad swelling following injection with DHT. T cell proliferative response is also impaired in mutant mice.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 20304 NCBI Gene Model | MGI Sequence Detail 4741 C57BL/6J ±  kb
transcript NM_013653 RefSeq | MGI Sequence Detail 579 C57BL/6  
polypeptide P30882 UniProt | EBI | MGI Sequence Detail 91 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 27
    Genomic 3
    cDNA 21
    Primer pair 3

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-14336
References
more
  • Summaries
    All 148
    Developmental Gene Expression 11
    Gene Ontology 16
    Phenotypes 38
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:277787 Ikuta K, et al., Nardilysin inhibits pancreatitis and suppresses pancreatic ductal adenocarcinoma initiation in mice. Gut. 2019 May;68(5):882-892

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/05/2019
MGI 6.14
The Jackson Laboratory