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Itga6 Gene Detail
Summary
  • Symbol
    Itga6
  • Name
    integrin alpha 6
  • Synonyms
    5033401O05Rik, Cd49f
  • Feature Type
    protein coding gene
  • IDs
    MGI:96605
    NCBI Gene: 16403
  • Gene Overview
    MyGene.info: ITGA6
  • Alliance
    gene page
Location & Maps
more
  • Sequence Map
    Chr2:71745616-71858416 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      112801 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 42.79 cM
  • Mapping Data
    4 experiments
Homology
more
  • Human Ortholog
    ITGA6, integrin subunit alpha 6
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ITGA6, integrin subunit alpha 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CD49f, ITGA6B, VLA-6
  • Links
    NCBI Gene ID: 3655
    neXtProt AC: NX_P23229
    UniProt: P23229

  • Chr Location
    2q31.1; chr2:172427354-172506455 (+)  GRCh38.p7
Human Diseases
more
  • Diseases
    1 with Itga6 mouse models; 1 with human ITGA6 associations

Human Disease Mouse Models
      
IDs
 View 1 model
      
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    27 phenotypes from 5 alleles in 7 genetic backgrounds
    35 phenotypes from multigenic genotypes
    42 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygotes for a targeted null mutation exhibit severe blistering of the skin and other epithelia, absence of hemidesmosomes, altered laminin deposition in brain, and ectopic neuroblastic outgrowths on the brain and in the eye. Mutants die at birth.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    51
  • GO References
    30
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    702
  • Tissues
    391
  • cDNA Data
    253
  • Literature Summary
    116
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic OTTMUSG00000013266 VEGA Gene Model | MGI Sequence Detail 112801 C57BL/6J ±  kb
    transcript OTTMUST00000032064 VEGA | MGI Sequence Detail 4156 Not Applicable  
    polypeptide OTTMUSP00000014264 VEGA | MGI Sequence Detail 1091 Not Applicable  
    For the selected sequence
    Polymorphisms
    less
    • SNPs within 2kb
      1092 from dbSNP Build 142
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 265
      Genomic 1
      cDNA 257
      Primer pair 6
      Other 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-11484, MGI:1923212, MGI:2138837
    References
    more
    • Summaries
      All 244
      Developmental Gene Expression 116
      Diseases 1
      Gene Ontology 30
      Phenotypes 42
    • Earliest
      J:35482 Sonnenberg A, et al., Laminin receptor on platelets is the integrin VLA-6. Nature. 1988 Dec 1;336(6198):487-9
    • Latest
      J:257654 Memic F, et al., Transcription and Signaling Regulators in Developing Neuronal Subtypes of Mouse and Human Enteric Nervous System. Gastroenterology. 2018 Feb;154(3):624-636
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    06/12/2018
    MGI 6.12     		The Jackson Laboratory