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Hoxa7
Gene Detail
Symbol

Name
ID
Member of
Hoxa7
homeobox A7
MGI:96179
Hoxa cluster
Synonyms
Hox-1.1
Feature Type
protein coding gene
Genetic Map
Chromosome 6
25.40 cM
Detailed Genetic Map ± 1 cM


Mapping data(11)
Sequence Map
Chr6:52214491-52221854 bp, - strand
From VEGA annotation of GRCm38

  7364 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56001  Vertebrate Homology Class
1 human; 1 mouse; 3 rat; 1 chimpanzee; 1 cattle; 1 dog; 3 chicken; 1 western clawed frog

HCOP human homology predictions: HOXA7
Protein SuperFamily: homeotic protein Hox A5/D4
Gene Tree: Hoxa7

Human
homologs
HOXA7, homeobox A7
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 3204
neXtProt AC: NX_P31268

Human Synonyms: ANTP, HOX1, HOX1.1, HOX1A

Human Chr (Location): 7p15.2; chr7:27153716-27156677 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Targeted(6)
Genomic Mutations involving Hoxa7 (1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a knock-out allele are viable, fertile and grossly normal with no apparent skeletal defects.
 
Interactions
Hoxa7 interacts with 232 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (50 records)
Data Summary: Results (194)    Tissues (142)    Images (22)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 133
Northern blot 4
RT-PCR 55
RNase protection 2
cDNA source data(34)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: GEISHA HOXA7 ; Xenbase hoxa7    NEW 
Molecular
reagents
All nucleic(67) Genomic(24) cDNA(35) Primer pair(7) Other(1)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000018867 (Evidence)
Ensembl Gene Model ENSMUSG00000038236 (Evidence)
Entrez Gene 15404 (Evidence)
UniGene 294826
DFCI TC1582224
NIA Mouse Gene Index U027309
Consensus CDS Project CCDS20145.1
International Mouse Phenotyping Consortium Status Hoxa7
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018867 VEGA Gene Model | MGI Sequence Detail 7364 C57BL/6J ±  kb
transcript OTTMUST00000045385 VEGA | MGI Sequence Detail 643 Not Applicable 
polypeptide OTTMUSP00000065276 VEGA | MGI Sequence Detail 182 Not Applicable 

For the selected sequences
All sequences(50) RefSeq(12) UniProt(6)
Polymorphisms
RFLP(1) : SNPs within 2kb(13 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR017970 Homeobox, conserved site
InterPro IPR017995 Homeobox protein, antennapedia type
InterPro IPR001827 Homeobox protein, antennapedia type, conserved site
InterPro IPR001356 Homeodomain
InterPro IPR009057 Homeodomain-like
InterPro IPR020479 Homeodomain, metazoa
Protein Ontology PR:000008695 homeobox protein Hox-A7
References
(Earliest) J:7833 Colberg-Poley AM, et al., Structural analysis of murine genes containing homoeo box sequences and their expression in embryonal carcinoma cells. Nature. 1985 Apr 25-May 1;314(6013):713-8
(Latest) J:218555 Sheikh BN, et al., Excessive versus physiologically relevant levels of retinoic acid in embryonic stem cell differentiation. Stem Cells. 2014 Jun;32(6):1451-8
All references(102)
Other
accession IDs
MGD-MRK-10815, MGD-MRK-10880, MGI:2141621

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory