About   Help   FAQ
Scarb1
Gene Detail
Symbol

Name
ID
Scarb1
scavenger receptor class B, member 1
MGI:893578
Synonyms
Cd36l1, Cla-1, D5Ertd460e, Hdlq1, Hlb398, Srb1, SRBI, SR-BI
Feature Type
protein coding gene
Genetic Map
Chromosome 5
64.11 cM
Detailed Genetic Map ± 1 cM


Mapping data(16)
Sequence Map
Chr5:125277087-125341094 bp, - strand
From VEGA annotation of GRCm38

  64008 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:21132  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SCARB1
Protein SuperFamily: lysosomal integral membrane protein II
Gene Tree: Scarb1

Human
homologs
SCARB1, scavenger receptor class B, member 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 949
neXtProt AC: NX_Q8WTV0

Human Synonyms: CD36L1, CLA1, CLA-1, HDLQTL6, SRB1, SR-BI

Human Chr (Location): 12q24.31; chr12:124777628-124863973 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(19) : Chemically induced (ENU)(1) Gene trapped(6) QTL(4) Targeted(7) Transgenic(1)
Incidental mutations (data from Mutagenetix , APF )
 
Targeted mutations result in abnormal lipoprotein metablolism and, for one allele, reversible female infertility. An ENU mutant shows increased cholesterol levels.
 
Interactions
Scarb1 interacts with 155 markers (Mir15a, Mir16-1, Mir19a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (66 annotations)
Process adhesion of symbiont to host, androgen biosynthetic process, ...
Component caveola, cell surface, ...
Function apolipoprotein A-I binding, apolipoprotein binding, ...
External Resources: FuncBase
Expression
Literature Summary: (18 records)
Data Summary: Results (126)    Tissues (47)    Images (29)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 82
RT-PCR 44
cDNA source data(21)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase scarb1 ; ZFIN scarb1    NEW 
Molecular
reagents
All nucleic(24) cDNA(21) Primer pair(2) Other(1)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000022742 (Evidence)
Ensembl Gene Model ENSMUSG00000037936 (Evidence)
Entrez Gene 20778 (Evidence)
DFCI TC1572096, TC1739182, TC1590445, TC1589927
DoTS DT.94407272, DT.536072, DT.94407273, DT.97392173, DT.97344626
NIA Mouse Gene Index U026741
PDB 3R69
Consensus CDS Project CCDS19683.1, CCDS57383.1
International Mouse Phenotyping Consortium Status Scarb1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022742 VEGA Gene Model | MGI Sequence Detail 64008 C57BL/6J ±  kb
transcript OTTMUST00000054565 VEGA | MGI Sequence Detail 2521 Not Applicable 
polypeptide OTTMUSP00000026063 VEGA | MGI Sequence Detail 509 Not Applicable 

For the selected sequences
All sequences(88) RefSeq(10) UniProt(7)
Polymorphisms
RFLP(1) : SNPs within 2kb(255 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR005428 Adhesion molecule CD36
InterPro IPR002159 CD36 antigen
Protein Ontology PR:000014493 scavenger receptor class B member 1
References
(Earliest) J:37371 Acton SL, et al., Expression cloning of SR-BI, a CD36-related class B scavenger receptor. J Biol Chem. 1994 Aug 19;269(33):21003-9
(Latest) J:221145 Widjaja-Adhi MA, et al., A genetic dissection of intestinal fat-soluble vitamin and carotenoid absorption. Hum Mol Genet. 2015 Jun 1;24(11):3206-19
All references(212)
Other
accession IDs
MGI:1196331, MGI:2140809, MGI:2387134, MGI:3575156

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/28/2015
MGI 5.22
The Jackson Laboratory