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Col4a2 Gene Detail
Summary
  • Symbol
    Col4a2
  • Name
    collagen, type IV, alpha 2
  • Synonyms
    Col4a-2, MGC:7371
  • Feature Type
    protein coding gene
  • IDs
    MGI:88455
    NCBI Gene: 12827
  • Gene Overview
    MyGene.info: COL4A2
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:11312805-11449287 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 5.62 cM
  • Mapping Data
    8 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1397 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_88455
protein coding gene Chr8:11312805-11449287 (.)
129S1/SvImJ MGP_129S1SvImJ_G0033352
protein coding gene Chr8:8518707-8657119 (+)
A/J MGP_AJ_G0033332
protein coding gene Chr8:8224414-8363437 (+)
AKR/J MGP_AKRJ_G0033263
protein coding gene Chr8:8469510-8607091 (+)
BALB/cJ MGP_BALBcJ_G0033333
protein coding gene Chr8:8373049-8510601 (+)
C3H/HeJ MGP_C3HHeJ_G0033046
protein coding gene Chr8:8642054-8780479 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033845
protein coding gene Chr8:8867047-9005470 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030815
protein coding gene Chr8:7757611-7895562 (+)
CAST/EiJ MGP_CASTEiJ_G0032368
protein coding gene Chr8:8365643-8512562 (+)
CBA/J MGP_CBAJ_G0033019
protein coding gene Chr8:9226358-9375258 (+)
DBA/2J MGP_DBA2J_G0033172
protein coding gene Chr8:8213702-8350372 (+)
FVB/NJ MGP_FVBNJ_G0033121
protein coding gene Chr8:8174757-8311960 (+)
LP/J MGP_LPJ_G0033266
protein coding gene Chr8:8434955-8580274 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033155
protein coding gene Chr8:9550412-9690300 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033862
protein coding gene Chr8:8488249-8626198 (+)
PWK/PhJ MGP_PWKPhJ_G0032081
protein coding gene Chr8:8197530-8337578 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031923
protein coding gene Chr8:8412339-8544212 (+)
WSB/EiJ MGP_WSBEiJ_G0032484
protein coding gene Chr8:8517199-8659212 (+)



Homology
more
  • Human Ortholog
    COL4A2, collagen type IV alpha 2 chain
  • Vertebrate Orthologs
    10
  • Human Ortholog
    COL4A2, collagen type IV alpha 2 chain
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ICH, POREN2
  • Links
    NCBI Gene ID: 1284
    neXtProt AC: NX_P08572
    UniProt: P08572

  • Chr Location
    13q34; chr13:110307284-110513027 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 1390
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: COL4A2
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with human COL4A2 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    69 phenotypes from 4 alleles in 4 genetic backgrounds
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
ENU-induced missense mutations of this gene result in a variable phenotype affecting the eye, brain and vascular stability in heterozygotes, and fetal or postnatal survival in homozygotes.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 12827 NCBI Gene Model | MGI Sequence Detail 136483 C57BL/6J ±  kb
    transcript NM_009932 RefSeq | MGI Sequence Detail 6467 C57BL/6  
    polypeptide P08122 UniProt | EBI | MGI Sequence Detail 1707 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 315
      Genomic 5
      cDNA 307
      Primer pair 3

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-2067, MGD-MRK-2069, MGI:2142691
    References
    more
    • Summaries
      All 119
      Developmental Gene Expression 43
      Gene Ontology 15
      Phenotypes 12
    • Earliest
      J:21950 Favor J, A comparison of the dominant cataract and recessive specific-locus mutation rates induced by treatment of male mice with ethylnitrosourea. Mutat Res. 1983 Aug;110(2):367-82
    • Latest
      J:263002 Komori T, et al., Type IV collagen alpha6 chain is a regulator of keratin 10 in keratinization of oral mucosal epithelium. Sci Rep. 2018 Feb 8;8(1):2612

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory