Gm25106 Gene Detail

Summary

• Symbol
  Gm25106
• Name
  predicted gene, 25106

• Feature Type
  snRNA gene
  BioType Conflict
  
• IDs
  MGI:5454883
  NCBI Gene: 115487922
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:98364511-98364634 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454883	snRNA gene	Chr11:98364501-98364634 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037348	snRNA gene	Chr11:101025029-101025162 (-)
A/J	MGP_AJ_G0037334	snRNA gene	Chr11:96820185-96820318 (-)
AKR/J	MGP_AKRJ_G0037279	snRNA gene	Chr11:99820615-99820748 (-)
BALB/cJ	MGP_BALBcJ_G0037324	snRNA gene	Chr11:97314113-97314246 (-)
C3H/HeJ	MGP_C3HHeJ_G0037008	snRNA gene	Chr11:99954102-99954235 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037839	snRNA gene	Chr11:104108272-104108405 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034845	snRNA gene	Chr11:94260461-94260587 (-)
CAST/EiJ	MGP_CASTEiJ_G0036185	snRNA gene	Chr11:100842344-100842474 (-)
CBA/J	MGP_CBAJ_G0036980	snRNA gene	Chr11:108428375-108428508 (-)
DBA/2J	MGP_DBA2J_G0037157	snRNA gene	Chr11:96363407-96363540 (-)
FVB/NJ	MGP_FVBNJ_G0037106	snRNA gene	Chr11:95872320-95872450 (-)
LP/J	MGP_LPJ_G0037206	snRNA gene	Chr11:101499278-101499411 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037116	snRNA gene	Chr11:108211614-108211747 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037957	snRNA gene	Chr11:100151245-100151378 (-)
PWK/PhJ	MGP_PWKPhJ_G0035883	snRNA gene	Chr11:97371648-97371780 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035681	snRNA gene	Chr11:99853881-99854013 (-)
WSB/EiJ	MGP_WSBEiJ_G0036395	snRNA gene	Chr11:100072684-100072817 (-)

Homology

• Gene Tree
  Gm25106
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm25106
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084621 (Evidence)
• NCBI Gene
  115487922

Representative Sequences			Length	Strain/Species
genomic	115487922	NCBI Gene Model | MGI Sequence Detail	124	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm25106:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110552	Chr11:98364629-98364633 (-)	3 bp