Ccdc39
Gene Detail

Symbol Name ID

Ccdc39 coiled-coil domain containing 39 MGI:1289263

Synonyms

4921507O14Rik, b2b1304Clo, b2b1735Clo, D3Ertd789e

Feature Type

protein coding gene

Genetic Map

Chromosome 3

16.32 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr3:33812362-33844310 bp, - strand From VEGA annotation of GRCm38   31949 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:12149  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Ccdc39

Human homologs

Human Homolog		CCDC39, coiled-coil domain containing 39
NCBI Gene ID		339829
neXtProt AC		NX_Q9UFE4
Human Synonyms		CILD14, FAP59
Human Chr (Location)		3q26.33; chr3:180331796-180397283 (-)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human CCDC39

Alleles and phenotypes

All alleles(4) : Targeted(2) Chemically induced(2)
 

Homozygous mutant mice exhibit situs inversus totalis with dextrocardia, double outlet right ventricle and atrial septal defects, kidney abnormalities including cysts and hydronephrosis, and immotile tracheal airway cilia.

 
Human Diseases Modeled Using Mouse Ccdc39 (1)    Alleles Annotated to Human Diseases(2)    Phenotype Images(15)

Gene Ontology (GO) classifications

All GO classifications: (15 annotations)

Process	axonemal dynein complex assembly, ciliary cell motility, ...
Component	cell projection, cilium, ...
Function	molecular_function

External Resources: FuncBase

Expression

cDNA source data(15)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(19) cDNA(17) Primer pair(1) Other(1)
Microarray probesets(9)

Other database links

VEGA Gene Model	OTTMUSG00000026483 (Evidence)
Ensembl Gene Model	ENSMUSG00000027676 (Evidence)
Entrez Gene	51938 (Evidence)
NIA Mouse Gene Index	U023926
Consensus CDS Project	CCDS17304.1
International Mouse Knockout Project Status	Ccdc39

Sequences

Length	Strain/Species
genomic	OTTMUSG00000026483	VEGA Gene Model | MGI Sequence Detail	31949	C57BL/6J
transcript	OTTMUST00000065474	VEGA | MGI Sequence Detail	3606	Not Applicable
polypeptide	OTTMUSP00000032639	VEGA | MGI Sequence Detail	937	Not Applicable

All sequences(41) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(216 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
Protein Ontology	PR:000032363	coiled-coil domain-containing protein 39

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)

Other accession IDs

MGI:1914785, MGI:2139706, MGI:2139809, MGI:5316773, MGI:5438051