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Ccdc39
Gene Detail
 Symbol
Name
ID
Ccdc39
coiled-coil domain containing 39
MGI:1289263
Synonyms 4921507O14Rik, b2b1304Clo, b2b1735Clo, b2b2025.1Clo, D3Ertd789e
Feature Type protein coding gene
Genetic Map
Chromosome 3
16.32 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr3:33812362-33844310 bp, - strand
From VEGA annotation of GRCm38

  31949 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:12149  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Ccdc39

Human
homologs
Human Homolog CCDC39, coiled-coil domain containing 39
NCBI Gene ID 339829
neXtProt AC  NX_Q9UFE4
Human Synonyms  CILD14, FAP59
Human Chr (Location)  3q26.33; chr3:180614008-180679495 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human CCDC39
Alleles
and
phenotypes
All alleles(5) : Targeted(2) Chemically induced(3)
 
Chemically induced mutations in this gene result in situs inversus totalis with dextrocardia, double outlet right ventricle and atrial septal defects, kidney abnormalities including cysts and hydronephrosis, and immotile tracheal airway cilia.
 
Human Diseases Modeled Using Mouse Ccdc39 (2)    Alleles Annotated to Human Diseases(3)    Phenotype Images(35)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process axonemal dynein complex assembly, cilium-dependent cell motility, ...
Component axoneme, cell projection, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(15)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(19) cDNA(17) Primer pair(1) Other(1)
Microarray probesets(9)
Other database
links
VEGA Gene ModelOTTMUSG00000026483 (Evidence)
Ensembl Gene ModelENSMUSG00000027676 (Evidence)
Entrez Gene51938 (Evidence)
NIA Mouse Gene IndexU023926
Consensus CDS ProjectCCDS17304.1
International Mouse Knockout Project StatusCcdc39
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000026483 VEGA Gene Model | MGI Sequence Detail 31949 C57BL/6J ±  kb
transcript OTTMUST00000065474 VEGA | MGI Sequence Detail 3606 Not Applicable 
polypeptide OTTMUSP00000032639 VEGA | MGI Sequence Detail 937 Not Applicable 

For the selected sequences
All sequences(51) RefSeq(12) UniProt(3)
Polymorphisms SNPs within 2kb(237 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000032363 coiled-coil domain-containing protein 39
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)
Other
accession IDs
MGI:1914785, MGI:2139706, MGI:2139809, MGI:5316773, MGI:5438051, MGI:5554524

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory