Gm20659 Gene Detail

Summary

• Symbol
  Gm20659
• Name
  predicted gene 20659

• Feature Type
  lncRNA gene
• IDs
  MGI:5313106
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:101861969-101862685 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 65.48 cM

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313106	lncRNA gene	Chr11:101861969-101862685 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003067	antisense lncRNA gene	Chr11:104912549-104913265 (+)
A/J	MGP_AJ_G0003044	antisense lncRNA gene	Chr11:100481818-100482781 (+)
AKR/J	MGP_AKRJ_G0003025	antisense lncRNA gene	Chr11:103594273-103594989 (+)
BALB/cJ	MGP_BALBcJ_G0003031	antisense lncRNA gene	Chr11:100966460-100967176 (+)
C3H/HeJ	MGP_C3HHeJ_G0002987	antisense lncRNA gene	Chr11:103799947-103800663 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003173	antisense lncRNA gene	Chr11:108184861-108185577 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002711	antisense lncRNA gene	Chr11:97905737-97906452 (+)
CAST/EiJ	MGP_CASTEiJ_G0002957	antisense lncRNA gene	Chr11:104764188-104764904 (+)
CBA/J	MGP_CBAJ_G0002984	antisense lncRNA gene	Chr11:112649523-112650239 (+)
DBA/2J	MGP_DBA2J_G0002990	antisense lncRNA gene	Chr11:100007375-100008091 (+)
FVB/NJ	MGP_FVBNJ_G0003009	antisense lncRNA gene	Chr11:99533851-99534567 (+)
LP/J	MGP_LPJ_G0003066	antisense lncRNA gene	Chr11:105429175-105429891 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002997	antisense lncRNA gene	Chr11:112178477-112179193 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003177	antisense lncRNA gene	Chr11:103956348-103957064 (+)
PWK/PhJ	MGP_PWKPhJ_G0002915	antisense lncRNA gene	Chr11:101067312-101068026 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002859	antisense lncRNA gene	Chr11:103698479-103699195 (+)
WSB/EiJ	MGP_WSBEiJ_G0002987	antisense lncRNA gene	Chr11:103941580-103942296 (+)

Homology

• Gene Tree
  Gm20659
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm20659
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000093467 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093467	Ensembl Gene Model | MGI Sequence Detail	717	C57BL/6J
transcript	ENSMUST00000176599	Ensembl | MGI Sequence Detail	604	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52