Gm3948 Gene Detail

Summary

• Symbol
  Gm3948
• Name
  predicted gene 3948
• Synonyms
  Gm11193

• Feature Type
  lncRNA gene
• IDs
  MGI:3782122
  NCBI Gene: 100042648
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:78183674-78184782 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 46.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782122	lncRNA gene	Chr11:78183669-78192337 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015188	unclassified non-coding RNA gene	Chr11:79286060-79287168 (-)
A/J	MGP_AJ_G0015162	unclassified non-coding RNA gene	Chr11:76255491-76256599 (-)
AKR/J	MGP_AKRJ_G0015125	unclassified non-coding RNA gene	Chr11:78559109-78560217 (-)
BALB/cJ	MGP_BALBcJ_G0015124	unclassified non-coding RNA gene	Chr11:76663896-76665004 (-)
C3H/HeJ	MGP_C3HHeJ_G0014948	unclassified non-coding RNA gene	Chr11:78600463-78601571 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015581	unclassified non-coding RNA gene	Chr11:81759188-81760296 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013324	unclassified non-coding RNA gene	Chr11:73227928-73229025 (-)
CAST/EiJ	MGP_CASTEiJ_G0014501	unclassified non-coding RNA gene	Chr11:79048365-79049469 (-)
CBA/J	MGP_CBAJ_G0014927	unclassified non-coding RNA gene	Chr11:85337399-85338507 (-)
DBA/2J	MGP_DBA2J_G0015020	unclassified non-coding RNA gene	Chr11:75834319-75835427 (-)
FVB/NJ	MGP_FVBNJ_G0015032	unclassified non-coding RNA gene	Chr11:75423297-75424405 (-)
LP/J	MGP_LPJ_G0015101	unclassified non-coding RNA gene	Chr11:79822056-79823164 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015058	unclassified non-coding RNA gene	Chr11:85740999-85742107 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015620	unclassified non-coding RNA gene	Chr11:78804909-78806017 (-)
PWK/PhJ	MGP_PWKPhJ_G0014293	unclassified non-coding RNA gene	Chr11:76622127-76623229 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014080	unclassified non-coding RNA gene	Chr11:78414407-78415515 (-)
WSB/EiJ	MGP_WSBEiJ_G0014604	unclassified non-coding RNA gene	Chr11:78623493-78624601 (-)

Homology

• Gene Tree
  Gm3948
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm3948
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000087295 (Evidence)
• NCBI Gene
  100042648

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087295	Ensembl Gene Model | MGI Sequence Detail	1109	C57BL/6J
transcript	ENSMUST00000147795	Ensembl | MGI Sequence Detail	421	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

Other
Accession IDs

MGI:3651755

References

• Summaries
  All 17

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52