Gm5414 Gene Detail

Summary

• Symbol
  Gm5414
• Name
  predicted gene 5414

• Feature Type
  protein coding gene
• IDs
  MGI:3646939
  NCBI Gene: 406223
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:101624028-101628188 bp, - strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 56.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646939	protein coding gene	Chr15:101624028-101628252 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022381	protein coding gene	Chr15:103724759-103734195 (-)
A/J	MGP_AJ_G0022343	protein coding gene	Chr15:99607933-99623589 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0022347	protein coding gene	Chr15:99719116-99725162 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0022795	protein coding gene	Chr15:107593657-107599508 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0021641	protein coding gene	Chr15:103592851-103597197 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0022283	protein coding gene	Chr15:103886765-103893941 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022213	protein coding gene	Chr15:114982404-114987980 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022809	protein coding gene	Chr15:102696040-102700116 (-)
PWK/PhJ	MGP_PWKPhJ_G0021380	protein coding gene	Chr15:99120482-99125138 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0021213	protein coding gene	Chr15:102586297-102590713 (-)
WSB/EiJ	MGP_WSBEiJ_G0021691	protein coding gene	Chr15:103336351-103341147 (-)

Homology

• Gene Tree
  Gm5414
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  26 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Radiation induced
  2
• Targeted
  2
• Genomic Mutations
  4 involving Gm5414
• Incidental Mutations
  APF
• Find Mice (IMSR)
  18 strains or lines available

Expression

• Assay Results
  631

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS27857.1

• Ensembl
  ENSMUSG00000064232 (Evidence)
• NCBI Gene
  406223

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000064232	Ensembl Gene Model | MGI Sequence Detail	4161	C57BL/6J
transcript	ENSMUST00000062879	Ensembl | MGI Sequence Detail	1659	Not Applicable
polypeptide	ENSMUSP00000059101	Ensembl | MGI Sequence Detail	552	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR018039 Intermediate filament protein, conserved site
  IPR039008 Intermediate filament, rod domain
  IPR042180 Intermediate filament, rod domain, coil 1B
  IPR003054 Keratin, type II
  IPR032444 Keratin type II head

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 36

  Diseases 1

  Phenotypes 26
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm5414:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr136581	Chr15:101628248-101628252 (-)	-62 bp