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Phf11b Gene Detail
Summary
  • Symbol
    Phf11b
  • Name
    PHD finger protein 11B
  • Synonyms
    Gm4902
  • Feature Type
    protein coding gene
  • IDs
    MGI:3645789
    NCBI Gene: 236451
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:59320964-59341351 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 31.48 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    98 from dbSNP Build 142
  • Strain Annotations
    6
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645789
protein coding gene Chr14:59320964-59341388 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021420
protein coding gene Chr14:53567932-53587911 (-)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0021164
protein coding gene Chr14:53911855-54083941 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021824
protein coding gene Chr14:56179996-56205497 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019363
protein coding gene Chr14:50586160-50630465 (-)
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J MGP_DBA2J_G0021252
protein coding gene Chr14:52069459-52096979 (-)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    PHF11, PHD finger protein 11
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PHF11, PHD finger protein 11
    Orthology source: HomoloGene, HGNC
  • Synonyms
    APY, BCAP, IGEL, IGER, IGHER, NYREN34, NY-REN-34
  • Links
    NCBI Gene ID: 51131
    neXtProt AC: NX_Q9UIL8
    UniProt: Q9UIL8

  • Chr Location
    13q14.2; chr13:49495610-49528992 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000091649 Ensembl Gene Model | MGI Sequence Detail 20388 C57BL/6J ±  kb
transcript ENSMUST00000166121 Ensembl | MGI Sequence Detail 1184 Not Applicable  
polypeptide ENSMUSP00000127857 Ensembl | MGI Sequence Detail 276 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR034732 Extended PHD (ePHD) domain
    IPR013083 Zinc finger, RING/FYVE/PHD-type
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 16
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
  • Latest
    J:217094 Zhang Y, et al., Functional analysis of a novel ENU-induced PHD finger 11 (Phf11) mouse mutant. Mamm Genome. 2014 Dec;25(11-12):573-82

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/30/2020
MGI 6.15
The Jackson Laboratory