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Phf11 Pseudogene Detail
Summary
  • Symbol
    Phf11
  • Name
    PHD finger protein 11
  • Synonyms
    Gm6904, Phf11-ps
  • Feature Type
    pseudogene
  • IDs
    MGI:3644962
    NCBI Gene: 628693
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:59244700-59260180 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 31.48 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    59 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644962
pseudogene Chr14:59238767-59260189 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021421
protein coding gene Chr14:53569605-53630602 (-)
A/J no annotation
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0021384
protein coding gene Chr14:52346520-52374563 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0021826
protein coding gene Chr14:56183518-56205497 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0021132
protein coding gene Chr14:57766436-57782727 (-)
DBA/2J MGP_DBA2J_G0021254
protein coding gene Chr14:52080860-52096979 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0021329
protein coding gene Chr14:54680097-54727861 (-)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0021848
protein coding gene Chr14:53522261-53590975 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    PHF11, PHD finger protein 11
  • Human Ortholog
    PHF11, PHD finger protein 11
    Orthology source: HGNC
  • Synonyms
    APY, BCAP, IGEL, IGER, IGHER, NYREN34, NY-REN-34
  • Links
    NCBI Gene ID: 51131
    neXtProt AC: NX_Q9UIL8
    UniProt: Q9UIL8

  • Chr Location
    13q14.2; chr13:49495610-49528992 (+)  GRCh38.p7

  • HCOP
    human homology predictions: PHF11
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090881 Ensembl Gene Model | MGI Sequence Detail 15481 C57BL/6J ±  kb
transcript ENSMUST00000224042 Ensembl | MGI Sequence Detail 603 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 9
    Phenotypes 2
  • Earliest
    J:217094 Zhang Y, et al., Functional analysis of a novel ENU-induced PHD finger 11 (Phf11) mouse mutant. Mamm Genome. 2014 Dec;25(11-12):573-82

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/23/2020
MGI 6.15
The Jackson Laboratory