About   Help   FAQ
Mir200c Gene Detail
Summary
  • Symbol
    Mir200c
  • Name
    microRNA 200c
  • Synonyms
    mir 200c, Mirn200c, mmu-mir-200c
Location &
Maps
more
  • Sequence Map
    Chr6:124695285-124695353 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 59.17 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    29 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3618750
 miRNA gene Chr6:124695285-124695353 (-)
129S1/SvImJ MGP_129S1SvImJ_G0008943
 miRNA gene Chr6:128021869-128021937 (-)
A/J MGP_AJ_G0008930
 miRNA gene Chr6:123208556-123208624 (-)
AKR/J MGP_AKRJ_G0008917
 miRNA gene Chr6:126568103-126568171 (-)
BALB/cJ MGP_BALBcJ_G0008917
 miRNA gene Chr6:122803389-122803457 (-)
C3H/HeJ MGP_C3HHeJ_G0008855
 miRNA gene Chr6:126616644-126616712 (-)
C57BL/6NJ MGP_C57BL6NJ_G0009148
 miRNA gene Chr6:131405342-131405410 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0008051
 miRNA gene Chr6:120395903-120395971 (-)
CAST/EiJ MGP_CASTEiJ_G0008694
 miRNA gene Chr6:126817928-126817996 (-)
CBA/J MGP_CBAJ_G0008824
 miRNA gene Chr6:136436226-136436294 (-)
DBA/2J MGP_DBA2J_G0008855
 miRNA gene Chr6:122135094-122135162 (-)
FVB/NJ MGP_FVBNJ_G0008872
 miRNA gene Chr6:121038533-121038601 (-)
LP/J MGP_LPJ_G0008948
 miRNA gene Chr6:128189047-128189115 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0008836
 miRNA gene Chr6:140491624-140491692 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0009121
 miRNA gene Chr6:126460066-126460134 (-)
PWK/PhJ MGP_PWKPhJ_G0008624
 miRNA gene Chr6:120362705-120362773 (-)
SPRET/EiJ MGP_SPRETEiJ_G0008467
 miRNA gene Chr6:124534839-124534907 (-)
WSB/EiJ MGP_WSBEiJ_G0008790
 miRNA gene Chr6:126816849-126816917 (-)



Homology
more
  • Human Ortholog
    MIR200C, microRNA 200c
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MIR200C, microRNA 200c
  • Synonyms
    mir-200c, MIRN200C
  • Links
    NCBI Gene ID: 406985

  • Chr Location
    chr12:6963699-6963766 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotypes from multigenic genotypes
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    718
  • Tissues
    4
  • Literature Summary
    16
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 723944 NCBI Gene Model | MGI Sequence Detail 69 C57BL/6J ±  kb
transcript NR_029792 RefSeq | MGI Sequence Detail 69 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    Primer pair 1
    Other 1
Other Database
Links
less
miRBase MI0000694
References
more
  • Summaries
    All 44
    Developmental Gene Expression 16
    Gene Ontology 7
    Phenotypes 6
  • Earliest
    J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
  • Latest
    J:336179 Won HJ, et al., Increased miR-200c levels disrupt palatal fusion by affecting apoptosis, cell proliferation, and cell migration. Biochem Biophys Res Commun. 2023 Jul 5;664:43-49
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory