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Samd3 Gene Detail
Summary
  • Symbol
    Samd3
  • Name
    sterile alpha motif domain containing 3
  • Synonyms
    LOC268288
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685469
    NCBI Gene: 268288
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:26229707-26272172 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 13.57 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    243 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685469
protein coding gene Chr10:26229521-26272916 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017102
protein coding gene Chr10:24271497-24318259 (+)
A/J MGP_AJ_G0017079
protein coding gene Chr10:23531798-23575967 (+)
AKR/J MGP_AKRJ_G0017039
protein coding gene Chr10:23923400-23971535 (+)
BALB/cJ MGP_BALBcJ_G0017042
protein coding gene Chr10:23666899-23709843 (+)
C3H/HeJ MGP_C3HHeJ_G0016862
protein coding gene Chr10:24136997-24183642 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017500
protein coding gene Chr10:25031614-25077873 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015198
protein coding gene Chr10:22178726-22237545 (+)
CAST/EiJ MGP_CASTEiJ_G0016441
protein coding gene Chr10:24143134-24191444 (+)
CBA/J MGP_CBAJ_G0016836
protein coding gene Chr10:26218838-26262847 (+)
DBA/2J MGP_DBA2J_G0016941
protein coding gene Chr10:23268417-23311588 (+)
FVB/NJ MGP_FVBNJ_G0016936
protein coding gene Chr10:22954133-22998572 (+)
LP/J MGP_LPJ_G0017018
protein coding gene Chr10:24277094-24324086 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016966
protein coding gene Chr10:26201254-26247066 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017536
protein coding gene Chr10:23807557-23853635 (+)
PWK/PhJ MGP_PWKPhJ_G0016223
protein coding gene Chr10:23073085-23117190 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016007
protein coding gene Chr10:23628417-23674390 (+)
WSB/EiJ MGP_WSBEiJ_G0016504
protein coding gene Chr10:23943943-23987403 (+)



Homology
more
  • Human Ortholog
    SAMD3, sterile alpha motif domain containing 3
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SAMD3, sterile alpha motif domain containing 3
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 154075
    neXtProt AC: NX_Q8N6K7
    UniProt: Q8N6K7

  • Chr Location
    6q23.1; chr6:130133203-130365425 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000051354 Ensembl Gene Model | MGI Sequence Detail 42466 C57BL/6J ±  kb
transcript ENSMUST00000220219 Ensembl | MGI Sequence Detail 1744 Not Applicable  
polypeptide ENSMUSP00000151558 Ensembl | MGI Sequence Detail 514 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 6
    Primer pair 1
    Other 1

    Microarray probesets 1
References
more
  • Summaries
    All 26
    Developmental Gene Expression 3
    Phenotypes 6
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:270210 Loo L, et al., Single-cell transcriptomic analysis of mouse neocortical development. Nat Commun. 2019 Jan 11;10(1):134

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory