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Ifna13 Gene Detail
Summary
  • Symbol
    Ifna13
  • Name
    interferon alpha 13
  • Feature Type
    protein coding gene
  • IDs
    MGI:2667155
    NCBI Gene: 230396
  • Member of
    Ifna cluster
  • Gene Overview
    MyGene.info: IFNA4
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr4:88643641-88644459 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 42.02 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    7 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2667155
protein coding gene Chr4:88643641-88644459 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028427
protein coding gene Chr4:88509813-88510631 (-)
A/J MGP_AJ_G0028388
protein coding gene Chr4:85429510-85430328 (-)
AKR/J MGP_AKRJ_G0028337
protein coding gene Chr4:87536309-87537127 (-)
BALB/cJ MGP_BALBcJ_G0028408
protein coding gene Chr4:85639250-85640068 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0028847
protein coding gene Chr4:91909868-91910686 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026146
protein coding gene Chr4:81417841-81418656 (-)
CAST/EiJ MGP_CASTEiJ_G0027563
protein coding gene Chr4:86103048-86103866 (-)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0028241
protein coding gene Chr4:85192609-85193427 (-)
FVB/NJ MGP_FVBNJ_G0028206
protein coding gene Chr4:84139397-84140215 (-)
LP/J MGP_LPJ_G0028341
protein coding gene Chr4:88870889-88871707 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028236
protein coding gene Chr4:99737137-99737955 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028884
protein coding gene Chr4:87678505-87679323 (-)
PWK/PhJ MGP_PWKPhJ_G0027286
protein coding gene Chr4:83512158-83513097 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027109
protein coding gene Chr4:85202997-85203809 (-)
WSB/EiJ MGP_WSBEiJ_G0027640
protein coding gene Chr4:87887799-87888617 (-)



Homology
more
  • Human Ortholog
    IFNA4, interferon alpha 4
  • Vertebrate Orthologs
    25
  • Human Ortholog
    IFNA4, interferon alpha 4
    Orthology source: HomoloGene
  • Synonyms
    IFN-alpha4a, INFA4
  • Links
    NCBI Gene ID: 3441
    neXtProt AC: NX_P05014
    UniProt: P05014

  • Chr Location
    9p21.3; chr9:21186618-21187599 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Genomic Mutations
    3 involving Ifna13
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 230396 NCBI Gene Model | MGI Sequence Detail 819 C57BL/6J ±  kb
transcript NM_177347 RefSeq | MGI Sequence Detail 819 C57BL/6  
polypeptide Q80SU4 UniProt | EBI | MGI Sequence Detail 189 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 22
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:101211 van Pesch V, et al., Characterization of interferon-alpha 13, a novel constitutive murine interferon-alpha subtype. J Biol Chem. 2003 Nov 21;278(47):46321-8
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory