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Car9 Gene Detail
Summary
  • Symbol
    Car9
  • Name
    carbonic anhydrase 9
  • Synonyms
    CAIX, MN/CA9
  • Feature Type
    protein coding gene
  • IDs
    MGI:2447188
    NCBI Gene: 230099
  • Gene Overview
    MyGene.info: CA9
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:43507026-43513729 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 23.05 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    64 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2447188
protein coding gene Chr4:43506966-43513729 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028210
protein coding gene Chr4:41626694-41634338 (+)
A/J MGP_AJ_G0028166
protein coding gene Chr4:40148880-40155610 (+)
AKR/J MGP_AKRJ_G0028118
protein coding gene Chr4:41061211-41067965 (+)
BALB/cJ MGP_BALBcJ_G0028186
protein coding gene Chr4:40236339-40243408 (+)
C3H/HeJ MGP_C3HHeJ_G0027908
protein coding gene Chr4:41686550-41693208 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028627
protein coding gene Chr4:43186109-43196332 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025939
protein coding gene Chr4:37596691-37603518 (+)
CAST/EiJ MGP_CASTEiJ_G0027348
protein coding gene Chr4:41190373-41198880 (+)
CBA/J MGP_CBAJ_G0027874
protein coding gene Chr4:44494475-44503059 (+)
DBA/2J MGP_DBA2J_G0028023
protein coding gene Chr4:40057367-40064194 (+)
FVB/NJ MGP_FVBNJ_G0027990
protein coding gene Chr4:39279292-39285905 (+)
LP/J MGP_LPJ_G0028122
protein coding gene Chr4:41675374-41686375 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028014
protein coding gene Chr4:47760155-47767894 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028663
protein coding gene Chr4:41256937-41264542 (+)
PWK/PhJ MGP_PWKPhJ_G0027074
protein coding gene Chr4:40101736-40108500 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0027428
protein coding gene Chr4:41158418-41166313 (+)



Homology
more
  • Human Ortholog
    CA9, carbonic anhydrase 9
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CA9, carbonic anhydrase 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CAIX, MN
  • Links
    NCBI Gene ID: 768
    neXtProt AC: NX_Q16790
    UniProt: Q16790

  • Chr Location
    9p13.3; chr9:35673859-35681159 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotypes from 2 alleles in 3 genetic backgrounds
    7 phenotypes from multigenic genotypes
    1 images
    14 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a targeted mutation are viable and fertile but develop hyperplasia of the glandular gastric epithelium with numerous cysts. Mice homozygous for a different mutation show an increased mean percentage of mature B cells in bone marrow.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 230099 NCBI Gene Model | MGI Sequence Detail 6704 C57BL/6J ±  kb
    transcript NM_139305 RefSeq | MGI Sequence Detail 1959 C57BL/6  
    polypeptide Q8VHB5 UniProt | EBI | MGI Sequence Detail 437 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 25
      Genomic 1
      cDNA 22
      Primer pair 2

      Microarray probesets 3
    References
    more
    • Summaries
      All 46
      Developmental Gene Expression 8
      Gene Ontology 6
      Phenotypes 14
    • Earliest
      J:80329 Gut MO, et al., Gastric hyperplasia in mice with targeted disruption of the carbonic anhydrase gene Car9. Gastroenterology. 2002 Dec;123(6):1889-903
    • Latest
      J:245009 Himmels P, et al., Motor neurons control blood vessel patterning in the developing spinal cord. Nat Commun. 2017 Mar 06;8:14583

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/13/2018
    MGI 6.13
    The Jackson Laboratory