About   Help   FAQ
Trappc11 Gene Detail
Summary
  • Symbol
    Trappc11
  • Name
    trafficking protein particle complex 11
  • Synonyms
    D030016E14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444585
    NCBI Gene: 320714
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:47490128-47533470 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 26.86 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    413 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444585
protein coding gene Chr8:47490115-47533470 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033596
protein coding gene Chr8:46659213-46702538 (-)
A/J MGP_AJ_G0033578
protein coding gene Chr8:44841425-44884653 (-)
AKR/J MGP_AKRJ_G0033503
protein coding gene Chr8:46140934-46184190 (-)
BALB/cJ MGP_BALBcJ_G0033575
protein coding gene Chr8:45013241-45058616 (-)
C3H/HeJ MGP_C3HHeJ_G0033284
protein coding gene Chr8:46710881-46756756 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034091
protein coding gene Chr8:48423412-48466710 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031040
protein coding gene Chr8:41065127-41108094 (-)
CAST/EiJ MGP_CASTEiJ_G0032610
protein coding gene Chr8:46137717-46183589 (-)
CBA/J MGP_CBAJ_G0033263
protein coding gene Chr8:50342744-50388322 (-)
DBA/2J MGP_DBA2J_G0033416
protein coding gene Chr8:44641643-44685615 (-)
FVB/NJ MGP_FVBNJ_G0033357
protein coding gene Chr8:44108920-44153145 (-)
LP/J MGP_LPJ_G0033504
protein coding gene Chr8:46654543-46700483 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033402
protein coding gene Chr8:50375215-50420708 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034109
protein coding gene Chr8:46321426-46366732 (-)
PWK/PhJ MGP_PWKPhJ_G0032318
protein coding gene Chr8:44153003-44197084 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032154
protein coding gene Chr8:45492486-45536243 (-)
WSB/EiJ MGP_WSBEiJ_G0032726
protein coding gene Chr8:46577194-46620461 (-)



Homology
more
  • Human Ortholog
    TRAPPC11, trafficking protein particle complex 11
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TRAPPC11, trafficking protein particle complex 11
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C4orf41, FOIGR, GRY, LGMD2S, LGMDR18
  • Links
    NCBI Gene ID: 60684
    neXtProt AC: NX_Q7Z392
    UniProt: Q7Z392

  • Chr Location
    4q35.1; chr4:183659267-183713594 (+)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human TRAPPC11 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Gene trapped
    3
  • Genomic Mutations
    1 involving Trappc11
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 320714 NCBI Gene Model | MGI Sequence Detail 43343 C57BL/6J ±  kb
transcript NM_177240 RefSeq | MGI Sequence Detail 4338 C57BL/6  
polypeptide B2RXC1 UniProt | EBI | MGI Sequence Detail 1133 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000031520 trafficking protein particle complex subunit 11
  • InterPro Domains
    IPR021773 Foie gras liver health family 1
    IPR025876 Trafficking protein particle complex subunit 11, C-terminal
Molecular
Reagents
less
  • All nucleic 95
    cDNA 95

    Microarray probesets 4
Other
Accession IDs
less
MGI:2142812, MGI:2142898
References
more
  • Summaries
    All 24
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory