About   Help   FAQ
BC027072
Gene Detail
 Symbol
Name
ID
BC027072
cDNA sequence BC027072
MGI:2385061
Synonyms MGC:38716
Feature Type protein coding gene
Genetic Map
Chromosome 17
42.67 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr17:71743557-71752885 bp, - strand
From Ensembl annotation of GRCm38

  9329 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:19792  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: BC027072

Human
homologs
Human Homolog C2orf71, chromosome 2 open reading frame 71
NCBI Gene ID 388939
neXtProt AC  NX_A6NGG8
Human Synonyms  RP54
Human Chr (Location)  2p23.2; chr2:29061690-29074261 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human C2orf71
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process detection of light stimulus involved in visual perception, response to stimulus, ...
Component cell projection, cilium, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (3)    Tissues (2)   
Theiler Stages: 22, 28
Assay TypeResults
RT-PCR 3
cDNA source data(15)
External Resources: GEO   ArrayExpress
Molecular
reagents
All nucleic(16) cDNA(15) Primer pair(1)
Microarray probesets(2)
Other database
links
Ensembl Gene ModelENSMUSG00000044375 (Evidence)
Entrez Gene225004 (Evidence)
UniGene134151
DFCITC1586325
DoTSDT.91334753
NIA Mouse Gene IndexU038043
Consensus CDS ProjectCCDS28962.1
International Mouse Knockout Project StatusBC027072
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000044375 Ensembl Gene Model | MGI Sequence Detail 9329 C57BL/6J ±  kb
transcript ENSMUST00000057405 Ensembl | MGI Sequence Detail 5004 Not Applicable 
polypeptide ENSMUSP00000051871 Ensembl | MGI Sequence Detail 1279 Not Applicable 

For the selected sequences
All sequences(16) RefSeq(4) UniProt(1)
Polymorphisms SNPs within 2kb(100 from dbSNP Build 137)
References (Earliest) J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
(Latest) J:169201 Collin RW, et al., Mutations in C2ORF71 cause autosomal-recessive retinitis pigmentosa. Am J Hum Genet. 2010 May 14;86(5):783-8
All references(21)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
04/08/2014
MGI 5.17
The Jackson Laboratory