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Atpaf1 Gene Detail
Summary
  • Symbol
    Atpaf1
  • Name
    ATP synthase mitochondrial F1 complex assembly factor 1
  • Synonyms
    6330547J17Rik, ATP11, ATP11p
  • Feature Type
    protein coding gene
  • IDs
    MGI:2180560
    NCBI Gene: 230649
  • Gene Overview
    MyGene.info: ATPAF1
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:115784814-115812314 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 53.06 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    140 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2180560
protein coding gene Chr4:115784812-115818828 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028608
protein coding gene Chr4:116626750-116657005 (+)
A/J MGP_AJ_G0028569
protein coding gene Chr4:112175377-112209002 (+)
AKR/J MGP_AKRJ_G0028518
protein coding gene Chr4:114585260-114615239 (+)
BALB/cJ MGP_BALBcJ_G0028590
protein coding gene Chr4:112807214-112836522 (+)
C3H/HeJ MGP_C3HHeJ_G0028304
protein coding gene Chr4:116158580-116193459 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029031
protein coding gene Chr4:121153891-121180019 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026315
protein coding gene Chr4:106225559-106255134 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0028271
protein coding gene Chr4:124443658-124478272 (+)
DBA/2J MGP_DBA2J_G0028419
protein coding gene Chr4:112823612-112858289 (+)
FVB/NJ MGP_FVBNJ_G0028387
protein coding gene Chr4:111310195-111343393 (+)
LP/J MGP_LPJ_G0028521
protein coding gene Chr4:116852067-116875789 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028414
protein coding gene Chr4:129462665-129496611 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029068
protein coding gene Chr4:115734024-115772745 (+)
PWK/PhJ MGP_PWKPhJ_G0027464
protein coding gene Chr4:109582255-109617184 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027287
protein coding gene Chr4:111983474-112014821 (+)
WSB/EiJ MGP_WSBEiJ_G0027817
protein coding gene Chr4:115600872-115635250 (+)



Homology
more
  • Human Ortholog
    ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATP11, ATP11p
  • Links
    NCBI Gene ID: 64756
    neXtProt AC: NX_Q5TC12
    UniProt: Q5TC12

  • Chr Location
    1p33; chr1:46635039-46668427 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 41492
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ATPAF1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 230649 NCBI Gene Model | MGI Sequence Detail 27501 C57BL/6J ±  kb
transcript NM_181040 RefSeq | MGI Sequence Detail 2330 C57BL/6  
polypeptide Q811I0 UniProt | EBI | MGI Sequence Detail 324 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    7 Sequences
  • InterPro Domains
    IPR010591 ATP11
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 5
Other
Accession IDs
less
MGI:2138294
References
more
  • Summaries
    All 34
    Gene Ontology 4
    Phenotypes 8
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory