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Glcci1
Gene Detail
Symbol

Name
ID
Glcci1
glucocorticoid induced transcript 1
MGI:2179717
Synonyms
2310047L21Rik, A130036A18Rik, Fam117c, GIG18, Tssn1
Feature Type
protein coding gene
Genetic Map
Chromosome 6
4.38 cM, cytoband A1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr6:8509600-8597548 bp, + strand
From VEGA annotation of GRCm38

  87949 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:15773  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: GLCCI1
Gene Tree: Glcci1

Human
homologs
GLCCI1, glucocorticoid induced 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 113263
neXtProt AC: NX_Q86VQ1

Human Synonyms: FAM117C, GCTR, GIG18, TSSN1

Human Chr (Location): 7p21.3; chr7:7968743-8089080 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human GLCCI1

Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF )
Interactions
Glcci1 interacts with 380 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (2 annotations)
Component cytoplasm
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (7 records)
Data Summary: Results (85)    Tissues (22)    Images (16)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 64
Northern blot 7
RT-PCR 11
RNase protection 3
cDNA source data(21)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase glcci1 ; ZFIN glcci1    NEW 
Molecular
reagents
All nucleic(27) cDNA(23) Primer pair(4)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000030314 (Evidence)
Ensembl Gene Model ENSMUSG00000029638 (Evidence)
Entrez Gene 170772 (Evidence)
Consensus CDS Project CCDS19910.2, CCDS71724.1, CCDS71725.1
International Mouse Phenotyping Consortium Status Glcci1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030314 VEGA Gene Model | MGI Sequence Detail 87949 C57BL/6J ±  kb
transcript OTTMUST00000072677 VEGA | MGI Sequence Detail 6200 Not Applicable 
polypeptide OTTMUSP00000037459 VEGA | MGI Sequence Detail 538 Not Applicable 

For the selected sequences
All sequences(58) RefSeq(6) UniProt(3)
Polymorphisms
SNPs within 2kb(668 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR026642 Glucocorticoid-induced transcript 1/FAM117
InterPro IPR026639 Glucocorticoid-induced transcript 1 protein
Protein Ontology PR:000008020 glucocorticoid-induced transcript 1 protein
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:177878 Nishibori Y, et al., Glcci1 deficiency leads to proteinuria. J Am Soc Nephrol. 2011 Nov;22(11):2037-46
All references(28)
Other
accession IDs
MGI:1923716, MGI:2384658, MGI:2442244

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory