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Glcci1 Gene Detail
Summary
  • Symbol
    Glcci1
  • Name
    glucocorticoid induced transcript 1
  • Synonyms
    2310047L21Rik, A130036A18Rik, Fam117c, GIG18, Tssn1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2179717
    NCBI Gene: 170772
  • Gene Overview
    MyGene.info: GLCCI1
  • Alliance
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:8509600-8597548 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 4.38 cM, cytoband A1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    662 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2179717
protein coding gene Chr6:8509600-8597549 (.)
129S1/SvImJ MGP_129S1SvImJ_G0030451
protein coding gene Chr6:5449019-5528356 (+)
A/J MGP_AJ_G0030424
protein coding gene Chr6:5272213-5351294 (+)
AKR/J MGP_AKRJ_G0030351
protein coding gene Chr6:5452019-5545855 (+)
BALB/cJ MGP_BALBcJ_G0030433
protein coding gene Chr6:5230551-5317643 (+)
C3H/HeJ MGP_C3HHeJ_G0030147
protein coding gene Chr6:5343673-5432249 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030888
protein coding gene Chr6:5607367-5700150 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028099
protein coding gene Chr6:4769693-4846388 (+)
CAST/EiJ MGP_CASTEiJ_G0029548
protein coding gene Chr6:5331211-5416648 (+)
CBA/J MGP_CBAJ_G0030125
protein coding gene Chr6:5747001-5847163 (+)
DBA/2J MGP_DBA2J_G0030269
protein coding gene Chr6:5197113-5283607 (+)
FVB/NJ MGP_FVBNJ_G0030223
protein coding gene Chr6:5168204-5252272 (+)
LP/J MGP_LPJ_G0030356
protein coding gene Chr6:5416121-5508620 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030259
protein coding gene Chr6:5837669-5953540 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030918
protein coding gene Chr6:5329527-5418650 (+)
PWK/PhJ MGP_PWKPhJ_G0029263
protein coding gene Chr6:5090342-5170148 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029099
protein coding gene Chr6:5387013-5468653 (+)
WSB/EiJ MGP_WSBEiJ_G0029625
protein coding gene Chr6:5325679-5411990 (+)



Homology
more
  • Human Ortholog
    GLCCI1, glucocorticoid induced 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    GLCCI1, glucocorticoid induced 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    FAM117C, GCTR, GIG18, TSSN1
  • Links
    NCBI Gene ID: 113263
    neXtProt AC: NX_Q86VQ1
    UniProt: Q86VQ1

  • Chr Location
    7p21.3; chr7:7968743-8089080 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 15773
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: GLCCI1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000029638 Ensembl Gene Model | MGI Sequence Detail 87949 C57BL/6J ±  kb
transcript ENSMUST00000064285 Ensembl | MGI Sequence Detail 6200 Not Applicable  
polypeptide ENSMUSP00000069444 Ensembl | MGI Sequence Detail 538 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR026642 Glucocorticoid-induced transcript 1/FAM117
    IPR026639 Glucocorticoid-induced transcript 1 protein
Molecular
Reagents
less
  • All nucleic 31
    cDNA 25
    Primer pair 5
    Other 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:1923716, MGI:2384658, MGI:2442244
References
more
  • Summaries
    All 33
    Developmental Gene Expression 10
    Gene Ontology 4
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:261809 Mayer C, et al., Developmental diversification of cortical inhibitory interneurons. Nature. 2018 Mar 22;555(7697):457-462

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory