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Slc26a6
Gene Detail
Symbol

Name
ID
Slc26a6
solute carrier family 26, member 6
MGI:2159728
Synonyms
B930010B04Rik, CFEX, Pat1
Feature Type
protein coding gene
Genetic Map
Chromosome 9
59.63 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr9:108853283-108913049 bp, + strand
From VEGA annotation of GRCm38

  59767 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:99903  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 3 zebrafish

HCOP human homology predictions: SLC26A6
Protein SuperFamily: sulfate transport protein
Gene Tree: Slc26a6

Human
homologs
SLC26A6, solute carrier family 26 (anion exchanger), member 6
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 65010
neXtProt AC: NX_Q9BXS9

Human Chr (Location): 3p21.3; chr3:48625723-48635493 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(3) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygous null mice display abnormal proximal tubule and duodenal anion exchange, but are otherwise normal.
 
Interactions
Slc26a6 interacts with 6 markers (Mir188, Mir320, Mir345, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (1)    Tissues (1)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 1
cDNA source data(11)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc26a6    NEW 
Molecular
reagents
All nucleic(11) cDNA(11)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000047370 (Evidence)
Ensembl Gene Model ENSMUSG00000023259 (Evidence)
Entrez Gene 171429 (Evidence)
DFCI TC1584490, TC1604076, TC1633732, TC1615082, TC1698996, TC1698437
DoTS DT.101725966, DT.91404229, DT.101725965, DT.50314998, DT.101725964, DT.101371240, DT.101371241
NIA Mouse Gene Index U011041
International Mouse Phenotyping Consortium Status Slc26a6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000047370 VEGA Gene Model | MGI Sequence Detail 59767 C57BL/6J ±  kb
transcript OTTMUST00000129391 VEGA | MGI Sequence Detail 4362 Not Applicable 
polypeptide OTTMUSP00000069502 VEGA | MGI Sequence Detail 629 Not Applicable 

For the selected sequences
All sequences(69) RefSeq(2) UniProt(5)
Polymorphisms
SNPs within 2kb(19 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002645 STAS domain
InterPro IPR001902 Sulphate anion transporter
InterPro IPR018045 Sulphate anion transporter, conserved site
InterPro IPR011547 Sulphate transporter
Protein Ontology PR:000015041 solute carrier family 26 member 6
References
(Earliest) J:75064 Knauf F, et al., Identification of a chloride-formate exchanger expressed on the brush border membrane of renal proximal tubule cells. Proc Natl Acad Sci U S A. 2001 Jul 31;98(16):9425-30
(Latest) J:220505 Park S, et al., Irbit mediates synergy between ca(2+) and cAMP signaling pathways during epithelial transport in mice. Gastroenterology. 2013 Jul;145(1):232-41
All references(55)
Other
accession IDs
MGI:2443071

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory