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Zscan5b Gene Detail
Summary
  • Symbol
    Zscan5b
  • Name
    zinc finger and SCAN domain containing 5B
  • Synonyms
    Zfg1, Zfp371
  • Feature Type
    protein coding gene
  • IDs
    MGI:2159640
    NCBI Gene: 170734
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr7:6222278-6239417 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 3.61 cM, cytoband A1
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    76 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2159640
protein coding gene Chr7:6222278-6239423 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031597
protein coding gene Chr7:3288520-3308280 (+)
A/J MGP_AJ_G0031571
protein coding gene Chr7:3200510-3222220 (+)
AKR/J MGP_AKRJ_G0031500
protein coding gene Chr7:3416462-3441872 (+)
BALB/cJ MGP_BALBcJ_G0031579
protein coding gene Chr7:3302380-3329306 (+)
C3H/HeJ MGP_C3HHeJ_G0031300
protein coding gene Chr7:3273507-3291263 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032041
protein coding gene Chr7:3487626-3506151 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029156
protein coding gene Chr7:2901570-2916455 (+)
CAST/EiJ MGP_CASTEiJ_G0030663
protein coding gene Chr7:3167537-3189283 (+)
CBA/J MGP_CBAJ_G0031257
protein coding gene Chr7:3583739-3604506 (+)
DBA/2J MGP_DBA2J_G0031416
protein coding gene Chr7:3229500-3246823 (+)
FVB/NJ MGP_FVBNJ_G0031369
protein coding gene Chr7:3226677-3245103 (+)
LP/J MGP_LPJ_G0031501
protein coding gene Chr7:3394199-3413223 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031408
protein coding gene Chr7:3591804-3611906 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032070
protein coding gene Chr7:3219691-3236823 (+)
PWK/PhJ MGP_PWKPhJ_G0030391
protein coding gene Chr7:3392029-3409946 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030217
protein coding gene Chr7:2803269-2821470 (+)
WSB/EiJ MGP_WSBEiJ_G0030758
protein coding gene Chr7:3370560-3388988 (+)



Homology
more
  • Human Ortholog
    ZSCAN5A, zinc finger and SCAN domain containing 5A
  • Vertebrate Orthologs
    15
  • Human Ortholog
    ZSCAN5A, zinc finger and SCAN domain containing 5A
    Orthology source: HGNC
  • Synonyms
    ZNF495, ZSCAN5
  • Links
    NCBI Gene ID: 79149
    neXtProt AC: NX_Q9BUG6
    UniProt: Q9BUG6

  • Chr Location
    19q13.43; chr19:56221303-56368383 (-)  GRCh38.p7

  • Human Ortholog
    ZSCAN5B, zinc finger and SCAN domain containing 5B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ZNF371, ZNF495B
  • Links
    NCBI Gene ID: 342933
    neXtProt AC: NX_A6NJL1
    UniProt: A6NJL1

  • Chr Location
    19q13.43; chr19:56189689-56197890 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    2 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 170734 NCBI Gene Model | MGI Sequence Detail 17140 C57BL/6J ±  kb
    transcript NM_133204 RefSeq | MGI Sequence Detail 1969 C57BL/6  
    polypeptide NP_573467 RefSeq | MGI Sequence Detail 468 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 19
      cDNA 18
      Primer pair 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 23
      Developmental Gene Expression 3
      Phenotypes 2
    • Earliest
      J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
    • Latest
      J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    09/10/2019
    MGI 6.14
    The Jackson Laboratory