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Pip4k2c
Gene Detail
Symbol

Name
ID
Pip4k2c
phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
MGI:2152214
Synonyms
Pip5k2c
Feature Type
protein coding gene
Genetic Map
Chromosome 10
74.50 cM, cytoband D3
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr10:127197067-127211622 bp, - strand
From Ensembl annotation of GRCm38

  14556 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23484  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: PIP4K2C
Protein SuperFamily: phosphatidylinositol-4-phosphate 5-kinase type II alpha
Gene Tree: Pip4k2c

Human
homologs
PIP4K2C, phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 79837
neXtProt AC: NX_Q8TBX8

Human Synonyms: PIP5K2C

Human Chr (Location): 12q13.3; chr12:57591159-57603428 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(2) Targeted(3)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Pip4k2c interacts with 254 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (179)    Tissues (138)    Images (10)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 178
Northern blot 1
cDNA source data(125)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase pip4k2c    NEW 
Molecular
reagents
All nucleic(128) cDNA(126) Primer pair(1) Other(1)
Microarray probesets(5)
Other database
links
Ensembl Gene Model ENSMUSG00000025417 (Evidence)
Entrez Gene 117150 (Evidence)
UniGene 22682
DFCI TC1572449, TC1756825, TC1713722
DoTS DT.101280560, DT.533438
NIA Mouse Gene Index U032329
EC 2.7.1.149
Consensus CDS Project CCDS24232.1
International Mouse Phenotyping Consortium Status Pip4k2c
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025417 Ensembl Gene Model | MGI Sequence Detail 14556 C57BL/6J ±  kb
transcript ENSMUST00000013970 Ensembl | MGI Sequence Detail 3374 Not Applicable 
polypeptide ENSMUSP00000013970 Ensembl | MGI Sequence Detail 421 Not Applicable 

For the selected sequences
All sequences(47) RefSeq(11) UniProt(1)
Polymorphisms
SNPs within 2kb(100 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR023610 Phosphatidylinositol-4-phosphate 5-kinase
InterPro IPR002498 Phosphatidylinositol-4-phosphate 5-kinase, core
InterPro IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup
InterPro IPR027483 Phosphatidylinositol-4-phosphate 5-kinase, C-terminal
InterPro IPR027484 Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain
Protein Ontology PR:000012743 phosphatidylinositol 5-phosphate 4-kinase type-2 gamma
References
(Earliest) J:75718 Akiba Y, et al., Localization of mRNAs for phosphatidylinositol phosphate kinases in the mouse brain during development. Brain Res Gene Expr Patterns. 2002 Jan;1(2):123-33
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory