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Slc38a1 Gene Detail
Summary
  • Symbol
    Slc38a1
  • Name
    solute carrier family 38, member 1
  • Synonyms
    NAT2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2145895
    NCBI Gene: 105727
  • Gene Overview
    MyGene.info: SLC38A1
  • Alliance
  • Transcription Start Sites
    18 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:96571418-96642913 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 52.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    651 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2145895
protein coding gene Chr15:96571418-96642913 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022270
protein coding gene Chr15:98162540-98233236 (-)
A/J MGP_AJ_G0022229
protein coding gene Chr15:94315544-94388456 (-)
AKR/J MGP_AKRJ_G0022204
protein coding gene Chr15:97148994-97232781 (-)
BALB/cJ MGP_BALBcJ_G0022235
protein coding gene Chr15:94522166-94595852 (-)
C3H/HeJ MGP_C3HHeJ_G0022005
protein coding gene Chr15:97201176-97272500 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022680
protein coding gene Chr15:101793165-101866867 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020206
protein coding gene Chr15:90307483-90379255 (-)
CAST/EiJ MGP_CASTEiJ_G0021527
protein coding gene Chr15:98074464-98149276 (-)
CBA/J MGP_CBAJ_G0021972
protein coding gene Chr15:105183405-105265063 (-)
DBA/2J MGP_DBA2J_G0022099
protein coding gene Chr15:93757970-93827785 (-)
FVB/NJ MGP_FVBNJ_G0022078
protein coding gene Chr15:92756160-92825815 (-)
LP/J MGP_LPJ_G0022170
protein coding gene Chr15:98279878-98356752 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022098
protein coding gene Chr15:109388537-109474118 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022695
protein coding gene Chr15:97277173-97353276 (-)
PWK/PhJ MGP_PWKPhJ_G0021268
protein coding gene Chr15:93837894-93912543 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021102
protein coding gene Chr15:97084939-97158360 (-)
WSB/EiJ MGP_WSBEiJ_G0021576
protein coding gene Chr15:97797066-97871904 (-)



Homology
more
  • Human Ortholog
    SLC38A1, solute carrier family 38 member 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SLC38A1, solute carrier family 38 member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATA1, NAT2, SAT1, SNAT1
  • Links
    NCBI Gene ID: 81539
    neXtProt AC: NX_Q9H2H9
    UniProt: Q9H2H9

  • Chr Location
    12q13.11; chr12:46183055-46269425 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    31 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 105727 NCBI Gene Model | MGI Sequence Detail 71496 C57BL/6J ±  kb
transcript NM_134086 RefSeq | MGI Sequence Detail 7752 C57BL/6  
polypeptide Q8K2P7 UniProt | EBI | MGI Sequence Detail 485 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 25
    cDNA 23
    Primer pair 2

    Microarray probesets 4
Other
Accession IDs
less
MGI:2145903, MGI:2146107, MGI:2146126
References
more
  • Summaries
    All 61
    Developmental Gene Expression 4
    Diseases 1
    Gene Ontology 5
    Phenotypes 31
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:240612 Walker LJ, et al., MAPK signaling promotes axonal degeneration by speeding the turnover of the axonal maintenance factor NMNAT2. Elife. 2017 Jan 17;6

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory