About   Help   FAQ
Vipas39
Gene Detail
Symbol

Name
ID
Vipas39
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
MGI:2144805
Synonyms
SPE-39, Vipar
Feature Type
protein coding gene
Genetic Map
Chromosome 12
41.44 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr12:87238875-87266286 bp, - strand
From Ensembl annotation of GRCm38

  27412 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41464  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: VIPAS39
Gene Tree: Vipas39

Human
homologs
VIPAS39, VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 63894
neXtProt AC: NX_Q9H9C1

Human Synonyms: C14orf133, hSPE-39, SPE39, SPE-39, VIPAR, VPS16B

Human Chr (Location): 14q24.3; chr14:77426675-77457640 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human VIPAS39

Mutations,
alleles, and
phenotypes
All mutations/alleles(16) : Gene trapped(13) Targeted(3)
Incidental mutations (data from APF )
Interactions
Vipas39 interacts with 137 markers (Mir10a, Mir10b, Mir17, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process cell differentiation, endosome to lysosome transport, ...
Component cytoplasm, cytoplasmic vesicle, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (17)    Tissues (11)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 17
cDNA source data(86)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase vipas39    NEW 
Molecular
reagents
All nucleic(87) cDNA(87)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000021038 (Evidence)
Entrez Gene 104799 (Evidence)
UniGene 208750
DFCI TC1628783, TC1594848, TC1618923, TC1574381
DoTS DT.91568782, DT.492279, DT.101388706, DT.101258244, DT.110912012, DT.101709284, DT.101735614
Consensus CDS Project CCDS26074.1, CCDS49119.1
International Mouse Phenotyping Consortium Status Vipas39
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021038 Ensembl Gene Model | MGI Sequence Detail 27412 C57BL/6J ±  kb
transcript ENSMUST00000072744 Ensembl | MGI Sequence Detail 2552 Not Applicable 
polypeptide ENSMUSP00000072527 Ensembl | MGI Sequence Detail 491 Not Applicable 

For the selected sequences
All sequences(52) RefSeq(12) UniProt(2)
Polymorphisms
SNPs within 2kb(97 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019177 Golgin subfamily A member 5
Protein Ontology PR:000032642 spermatogenesis-defective protein 39 homolog
References
(Earliest) J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(31)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
05/20/2015
MGI 5.22
The Jackson Laboratory