Vipas39
Gene Detail

Symbol Name ID

Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog MGI:2144805

Synonyms

SPE-39, Vipar

Feature Type

protein coding gene

Genetic Map

Chromosome 12

41.44 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr12:87238875-87266286 bp, - strand From NCBI annotation of GRCm38   27412 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:41464  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Vipas39

Human homologs

Human Homolog		VIPAS39, VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
NCBI Gene ID		63894
neXtProt AC		NX_Q9H9C1
Human Synonyms		C14orf133, hSPE-39, SPE39, SPE-39, VIPAR, VPS16B
Human Chr (Location)		14q24.3-q31; chr14:77893018-77923983 (-)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human VIPAS39

Alleles and phenotypes

All alleles(16) : Targeted(3) Gene trapped(13)

Gene Ontology (GO) classifications

All GO classifications: (16 annotations)

Process	cell differentiation, endosome to lysosome transport, ...
Component	cytoplasm, cytoplasmic vesicle, ...
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (17)    Tissues (9)    Images (4)
Theiler Stages: 24, 26, 28

Assay Type	Results
RNA in situ	17

cDNA source data(86)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(87) cDNA(87)
Microarray probesets(3)

Other database links

Ensembl Gene Model	ENSMUSG00000021038 (Evidence)
Entrez Gene	104799 (Evidence)
UniGene	208750
DFCI	TC1574381, TC1594848, TC1618923, TC1628783
DoTS	DT.101258244, DT.101388706, DT.101709284, DT.101735614, DT.110912012, DT.492279, DT.91568782
Consensus CDS Project	CCDS26074.1, CCDS49119.1
International Mouse Knockout Project Status	Vipas39

Sequences

Length	Strain/Species
genomic	104799	NCBI Gene Model | MGI Sequence Detail	27412	C57BL/6J
transcript	NM_001142580	RefSeq | MGI Sequence Detail	2552	C57BL/6
polypeptide	Q8BGQ1	UniProt | EBI | MGI Sequence Detail	491	Not Applicable

All sequences(46) RefSeq(6) UniProt(2)

Polymorphisms

SNPs(66 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR019177	Golgin subfamily A member 5
Protein Ontology	PR:000032642	spermatogenesis-defective protein 39 homolog

Graphical View of Protein Domain Structure

References

(Earliest) J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(33)