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Vipas39
Gene Detail
Symbol

Name
ID
Vipas39
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
MGI:2144805
Synonyms
SPE-39, Vipar
Feature Type
protein coding gene
Genetic Map
Chromosome 12
41.44 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr12:87238875-87266286 bp, - strand
From NCBI annotation of GRCm38

  27412 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41464  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Vipas39

Human
homologs
Human Homolog VIPAS39, VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
NCBI Gene ID 63894
neXtProt AC  NX_Q9H9C1
Human Synonyms  C14orf133, hSPE-39, SPE39, SPE-39, VIPAR, VPS16B
Human Chr (Location)  14q24.3-q31; chr14:77426675-77457640 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human VIPAS39
Mutations,
alleles, and
phenotypes
All mutations/alleles(16) : Gene trapped(13) Targeted(3)
Incidental mutations (data from APF )
Interactions
Vipas39 interacts with 137 markers (Mir10a, Mir10b, Mir17, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process cell differentiation, endosome to lysosome transport, ...
Component cytoplasm, cytoplasmic vesicle, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (17)    Tissues (11)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 17
cDNA source data(86)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(87) cDNA(87)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000021038 (Evidence)
Entrez Gene104799 (Evidence)
UniGene208750
DFCITC1574381, TC1594848, TC1618923, TC1628783
DoTSDT.101258244, DT.101388706, DT.101709284, DT.101735614, DT.110912012, DT.492279, DT.91568782
Consensus CDS ProjectCCDS26074.1, CCDS49119.1
International Mouse Knockout Project StatusVipas39
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 104799 NCBI Gene Model | MGI Sequence Detail 27412 C57BL/6J ±  kb
transcript NM_001142580 RefSeq | MGI Sequence Detail 2552 C57BL/6 
polypeptide Q8BGQ1 UniProt | EBI | MGI Sequence Detail 491 Not Applicable 

For the selected sequences
All sequences(51) RefSeq(10) UniProt(3)
Polymorphisms
SNPs within 2kb(97 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019177 Golgin subfamily A member 5
Protein Ontology PR:000032642 spermatogenesis-defective protein 39 homolog
Graphical View of Protein Domain Structure
References
(Earliest) J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/21/2014
MGI 5.20
The Jackson Laboratory