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C2cd3
Gene Detail
 Symbol
Name
ID
C2cd3
C2 calcium-dependent domain containing 3
MGI:2142166
Feature Type protein coding gene
Genetic Map
Chromosome 7
54.35 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr7:100372233-100470152 bp, + strand
From VEGA annotation of GRCm38

  97920 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:19524  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: C2cd3

Human
homologs
Human Homolog C2CD3, C2 calcium-dependent domain containing 3
NCBI Gene ID 26005
neXtProt AC  NX_Q4AC94
Human Chr (Location)  11q13.4; chr11:74012714-74171019 (-)  GRCh38
Alleles
and
phenotypes
All alleles(16) : Chemically induced (ENU)(1) Gene trapped(12) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygotes inactivating allele are embryonic lethal with pericardial edema and twisted body axis, abnormal patterning of brain and open neural tube defect.
 
Gene Ontology
(GO)
classifications
All GO classifications: (26 annotations)
Process brain development, cell projection organization, ...
Component cell projection, centriolar satellite, ...
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (14)    Tissues (7)   
Theiler Stages: 1, 2, 3, 5, 28
Assay TypeResults
RT-PCR 14
cDNA source data(132)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(133) cDNA(132) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000031837 (Evidence)
Ensembl Gene ModelENSMUSG00000047248 (Evidence)
Entrez Gene277939 (Evidence)
UniGene276374
DFCITC1576452, TC1633517, TC1660512, TC1664278
NIA Mouse Gene IndexU008452
Consensus CDS ProjectCCDS57568.1
International Mouse Knockout Project StatusC2cd3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031837 VEGA Gene Model | MGI Sequence Detail 97920 C57BL/6J ±  kb
transcript OTTMUST00000078942 VEGA | MGI Sequence Detail 7803 Not Applicable 
polypeptide OTTMUSP00000042045 VEGA | MGI Sequence Detail 2323 Not Applicable 

For the selected sequences
All sequences(84) RefSeq(11) UniProt(9)
Polymorphisms SNPs within 2kb(803 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000008 C2 calcium-dependent membrane targeting
Protein Ontology PR:000029307 C2 domain-containing protein 3
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:206657 Ye X, et al., C2cd3 is critical for centriolar distal appendage assembly and ciliary vesicle docking in mammals. Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2164-9
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory