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Lrtm2 Gene Detail
Summary
  • Symbol
    Lrtm2
  • Name
    leucine-rich repeats and transmembrane domains 2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2141485
    NCBI Gene: 211187
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:119315133-119330766 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 56.73 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    104 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2141485
 protein coding gene Chr6:119315133-119332270 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031192
 protein coding gene Chr6:122103006-122118655 (-)
A/J MGP_AJ_G0031161
 protein coding gene Chr6:117435049-117450694 (-)
AKR/J MGP_AKRJ_G0031092
 protein coding gene Chr6:120582298-120597947 (-)
BALB/cJ MGP_BALBcJ_G0031172
 protein coding gene Chr6:117205712-117221357 (-)
C3H/HeJ MGP_C3HHeJ_G0030538
 protein coding gene Chr6:63702005-63717650 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031630
 protein coding gene Chr6:125221186-125236819 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028791
 protein coding gene Chr6:114352211-114366264 (-)
CAST/EiJ MGP_CASTEiJ_G0030279
 protein coding gene Chr6:121020892-121036355 (-)
CBA/J MGP_CBAJ_G0030855
 protein coding gene Chr6:130178665-130194310 (-)
DBA/2J MGP_DBA2J_G0031011
 protein coding gene Chr6:116337488-116353137 (-)
FVB/NJ MGP_FVBNJ_G0030963
 protein coding gene Chr6:115460473-115476359 (-)
LP/J MGP_LPJ_G0031090
 protein coding gene Chr6:122117462-122133111 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030997
 protein coding gene Chr6:134204731-134220376 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031659
 protein coding gene Chr6:120626723-120642368 (-)
PWK/PhJ MGP_PWKPhJ_G0029994
 protein coding gene Chr6:115342658-115358369 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029823
 protein coding gene Chr6:119336540-119353274 (-)
WSB/EiJ MGP_WSBEiJ_G0030362
 protein coding gene Chr6:120888307-120905108 (-)



Homology
more
  • Human Ortholog
    LRTM2, leucine rich repeats and transmembrane domains 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    LRTM2, leucine rich repeats and transmembrane domains 2
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 654429
    neXtProt AC: NX_Q8N967
    UniProt: Q8N967

  • Chr Location
    12p13.33; chr12:1820267-1836753 (+)  GRCh38.p7
  • HomoloGene
    Vertebrate Homology Class 65244
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: LRTM2
  • Gene Tree
    Lrtm2
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    631
  • cDNA Data
    7
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000055003 Ensembl Gene Model | MGI Sequence Detail 15634 C57BL/6J ±  kb
transcript ENSMUST00000068351 Ensembl | MGI Sequence Detail 4001 Not Applicable  
polypeptide ENSMUSP00000063882 Ensembl | MGI Sequence Detail 370 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000031711 leucine-rich repeat and transmembrane domain-containing protein 2
    (term hierarchy)
  • InterPro Domains
    IPR000483 Cysteine-rich flanking region, C-terminal
    IPR001611 Leucine-rich repeat
    IPR032675 Leucine-rich repeat domain superfamily
    IPR000372 Leucine-rich repeat N-terminal domain
    IPR003591 Leucine-rich repeat, typical subtype
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:211830 Um JW, et al., Calsyntenins function as synaptogenic adhesion molecules in concert with neurexins. Cell Rep. 2014 Mar 27;6(6):1096-109
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
05/26/2020
MGI 6.15 		The Jackson Laboratory