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Hnrnpf Gene Detail
Summary
  • Symbol
    Hnrnpf
  • Name
    heterogeneous nuclear ribonucleoprotein F
  • Synonyms
    4833420I20Rik, Hnrpf
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138741
    NCBI Gene: 98758
  • Gene Overview
    MyGene.info: HNRNPF
  • Alliance
  • Transcription Start Sites
    20 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:117900340-117925622 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 55.66 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    31 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138741
protein coding gene Chr6:117900324-117925622 (.)
129S1/SvImJ MGP_129S1SvImJ_G0031180
protein coding gene Chr6:120618296-120643918 (+)
A/J MGP_AJ_G0028233
protein coding gene Chr4:45017727-45019953 (-)
AKR/J MGP_AKRJ_G0031080
protein coding gene Chr6:119127721-119154438 (+)
BALB/cJ MGP_BALBcJ_G0031160
protein coding gene Chr6:115801905-115810510 (+)
C3H/HeJ MGP_C3HHeJ_G0030549
protein coding gene Chr6:65146029-65176350 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031618
protein coding gene Chr6:123725521-123754636 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0030267
protein coding gene Chr6:119500286-119528672 (+)
CBA/J MGP_CBAJ_G0024400
protein coding gene Chr19:2206369-2207215 (-)
DBA/2J MGP_DBA2J_G0035508
protein coding gene ChrX:45174183-45175927 (-)
FVB/NJ MGP_FVBNJ_G0019390
protein coding gene Chr12:1429060-1430804 (-)
LP/J MGP_LPJ_G0031078
protein coding gene Chr6:120647657-120674828 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035495
protein coding gene ChrX:49359586-49362190 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031647
protein coding gene Chr6:119152070-119177681 (+)
PWK/PhJ MGP_PWKPhJ_G0018606
protein coding gene Chr11:120834804-120836028 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0030350
protein coding gene Chr6:119416885-119446835 (+)



Homology
more
  • Human Ortholog
    HNRNPF, heterogeneous nuclear ribonucleoprotein F
  • Vertebrate Orthologs
    7
  • Human Ortholog
    HNRNPF, heterogeneous nuclear ribonucleoprotein F
    Orthology source: HomoloGene
  • Synonyms
    HNRPF, mcs94-1, OK/SW-cl.23
  • Links
    NCBI Gene ID: 3185
    neXtProt AC: NX_P52597
    UniProt: P52597

  • Chr Location
    10q11.21; chr10:43385617-43409248 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 98758 NCBI Gene Model | MGI Sequence Detail 25283 C57BL/6J ±  kb
transcript NM_001166430 RefSeq | MGI Sequence Detail 2548 C57BL/6  
polypeptide Q9Z2X1 UniProt | EBI | MGI Sequence Detail 415 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 12
    Primer pair 2

    Microarray probesets 7
References
more
  • Summaries
    All 36
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:264535 Du J, et al., FOXP3 interacts with hnRNPF to modulate pre-mRNA alternative splicing. J Biol Chem. 2018 Jun 29;293(26):10235-10244

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory