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Slc12a6 Gene Detail
Summary
  • Symbol
    Slc12a6
  • Name
    solute carrier family 12, member 6
  • Synonyms
    gaxp, KCC3
  • Feature Type
    protein coding gene
  • IDs
    MGI:2135960
    NCBI Gene: 107723
  • Gene Overview
    MyGene.info: SLC12A6
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:112266042-112363163 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 56.99 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    314 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2135960
 protein coding gene Chr2:112265825-112363163 (.)
129S1/SvImJ MGP_129S1SvImJ_G0026287
 protein coding gene Chr2:114711583-114810473 (+)
A/J MGP_AJ_G0026248
 protein coding gene Chr2:110010475-110103818 (+)
AKR/J MGP_AKRJ_G0026227
 protein coding gene Chr2:113100933-113191462 (+)
BALB/cJ MGP_BALBcJ_G0026261
 protein coding gene Chr2:110277928-110370374 (+)
C3H/HeJ MGP_C3HHeJ_G0026006
 protein coding gene Chr2:113494380-113592165 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026708
 protein coding gene Chr2:118512984-118614756 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024088
 protein coding gene Chr2:105243329-105343714 (+)
CAST/EiJ MGP_CASTEiJ_G0025469
 protein coding gene Chr2:113780178-113864022 (+)
CBA/J MGP_CBAJ_G0025983
 protein coding gene Chr2:122643875-122746079 (+)
DBA/2J MGP_DBA2J_G0026122
 protein coding gene Chr2:109466303-109567575 (+)
FVB/NJ MGP_FVBNJ_G0026084
 protein coding gene Chr2:108353936-108445771 (+)
LP/J MGP_LPJ_G0026223
 protein coding gene Chr2:114994555-115091092 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026103
 protein coding gene Chr2:127046726-127153441 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026763
 protein coding gene Chr2:113167826-113263838 (+)
PWK/PhJ MGP_PWKPhJ_G0025205
 protein coding gene Chr2:108975041-109069167 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025004
 protein coding gene Chr2:112358536-112455981 (+)
WSB/EiJ MGP_WSBEiJ_G0025538
 protein coding gene Chr2:113976642-114070269 (+)



Homology
more
  • Human Ortholog
    SLC12A6, solute carrier family 12 member 6
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SLC12A6, solute carrier family 12 member 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ACCPN, KCC3, KCC3A, KCC3B
  • Links
    NCBI Gene ID: 9990
    neXtProt AC: NX_Q9UHW9
    UniProt: Q9UHW9

  • Chr Location
    15q14; chr15:34229996-34338064 (-)  GRCh38.p7
Human Diseases
more
  • Diseases
    2 with Slc12a6 mouse models; 1 with human SLC12A6 associations

Human Disease Mouse Models
      
IDs
 View 3 models
      
IDs
 View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    4 with disease annotations
  • References
    4 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    58 phenotypes from 9 alleles in 14 genetic backgrounds
    3 images
    28 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygotes for targeted null mutations exhibit locomotor deficits, progressive neurodegeneration, slow progressive deafness and failure to breed.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    25
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    18
  • Tissues
    3
  • cDNA Data
    9
  • Literature Summary
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 107723 NCBI Gene Model | MGI Sequence Detail 97122 C57BL/6J ±  kb
    transcript NM_133649 RefSeq | MGI Sequence Detail 6631 C57BL/6  
    polypeptide Q924N4 UniProt | EBI | MGI Sequence Detail 1150 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 10
      cDNA 9
      Primer pair 1

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:2447470
    References
    more
    • Summaries
      All 62
      Developmental Gene Expression 8
      Diseases 4
      Gene Ontology 6
      Phenotypes 28
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:260635 Bowerman M, et al., KCC3 loss-of-function contributes to Andermann syndrome by inducing activity-dependent neuromuscular junction defects. Neurobiol Dis. 2017 Oct;106:35-48
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/13/2018
    MGI 6.13     		The Jackson Laboratory