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Slc1a4
Gene Detail
Symbol

Name
ID
Slc1a4
solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
MGI:2135601
Synonyms
ASCT1
Feature Type
protein coding gene
Genetic Map
Chromosome 11
12.97 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr11:20302205-20332684 bp, - strand
From VEGA annotation of GRCm38

  30480 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:20655  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: glutamate/aspartate transport protein
Gene Tree: Slc1a4

Human
homologs
Human Homolog SLC1A4, solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
NCBI Gene ID 6509
neXtProt AC  NX_P43007
Human Synonyms  ASCT1, SATT
Human Chr (Location)  2p15-p13; chr2:64988445-65023865 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(2) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc1a4 interacts with 278 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (6 records)
Data Summary: Results (103)    Tissues (20)    Images (28)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 103
cDNA source data(89)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(91) cDNA(89) Primer pair(1) Other(1)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000005224 (Evidence)
Ensembl Gene ModelENSMUSG00000020142 (Evidence)
Entrez Gene55963 (Evidence)
UniGene6379
DFCITC1574431
DoTSDT.40170897
NIA Mouse Gene IndexU032553
Consensus CDS ProjectCCDS24457.1
International Mouse Knockout Project StatusSlc1a4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005224 VEGA Gene Model | MGI Sequence Detail 30480 C57BL/6J ±  kb
transcript OTTMUST00000011656 VEGA | MGI Sequence Detail 3872 Not Applicable 
polypeptide OTTMUSP00000005409 VEGA | MGI Sequence Detail 452 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(2) UniProt(6)
Polymorphisms
SNPs within 2kb(616 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001991 Sodium:dicarboxylate symporter
InterPro IPR018107 Sodium:dicarboxylate symporter, conserved site
Protein Ontology PR:000014975 neutral amino acid transporter A
References
(Earliest) J:69064 Marin M, et al., Sodium-dependent neutral amino acid transporter type 1 is an auxiliary receptor for baboon endogenous retrovirus. J Virol. 2000 Sep;74(17):8085-93
(Latest) J:205051 Miller JA, et al., Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development. 2013 Nov;140(22):4633-44
All references(38)
Other
accession IDs
MGI:2144477

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory